Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00925 and HSERO_RS00930 are separated by 519 nucleotides HSERO_RS00930 and HSERO_RS00935 are separated by 17 nucleotides
HSERO_RS00925: HSERO_RS00925 - porin, at 194,590 to 195,762
_RS00925
HSERO_RS00930: HSERO_RS00930 - hypothetical protein, at 196,282 to 197,823
_RS00930
HSERO_RS00935: HSERO_RS00935 - TonB-denpendent receptor, at 197,841 to 199,955
_RS00935
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1 at 195.313 kb on + strand, within HSERO_RS00925 at 195.313 kb on + strand, within HSERO_RS00925 at 195.321 kb on - strand, within HSERO_RS00925 at 195.321 kb on - strand, within HSERO_RS00925 at 195.607 kb on - strand, within HSERO_RS00925 at 195.694 kb on - strand at 195.964 kb on - strand at 196.005 kb on + strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.316 kb on - strand at 196.402 kb on - strand at 196.486 kb on - strand, within HSERO_RS00930 at 196.488 kb on + strand, within HSERO_RS00930 at 196.595 kb on + strand, within HSERO_RS00930 at 196.821 kb on - strand, within HSERO_RS00930 at 196.824 kb on + strand, within HSERO_RS00930 at 196.850 kb on + strand, within HSERO_RS00930 at 196.885 kb on - strand, within HSERO_RS00930 at 196.990 kb on + strand, within HSERO_RS00930 at 197.089 kb on - strand, within HSERO_RS00930 at 197.175 kb on - strand, within HSERO_RS00930 at 197.216 kb on + strand, within HSERO_RS00930 at 197.267 kb on - strand, within HSERO_RS00930 at 197.299 kb on + strand, within HSERO_RS00930 at 197.325 kb on + strand, within HSERO_RS00930 at 197.343 kb on + strand, within HSERO_RS00930 at 197.379 kb on + strand, within HSERO_RS00930 at 197.399 kb on - strand, within HSERO_RS00930 at 197.413 kb on + strand, within HSERO_RS00930 at 197.475 kb on + strand, within HSERO_RS00930 at 197.530 kb on + strand, within HSERO_RS00930 at 197.640 kb on + strand, within HSERO_RS00930 at 197.707 kb on + strand at 197.715 kb on - strand at 197.715 kb on - strand at 197.818 kb on + strand at 197.858 kb on + strand at 197.961 kb on - strand at 197.963 kb on - strand at 198.023 kb on + strand at 198.023 kb on + strand at 198.031 kb on - strand at 198.233 kb on + strand, within HSERO_RS00935 at 198.321 kb on - strand, within HSERO_RS00935 at 198.445 kb on + strand, within HSERO_RS00935 at 198.459 kb on - strand, within HSERO_RS00935 at 198.482 kb on + strand, within HSERO_RS00935 at 198.490 kb on - strand, within HSERO_RS00935 at 198.605 kb on + strand, within HSERO_RS00935 at 198.613 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.695 kb on - strand, within HSERO_RS00935 at 198.719 kb on - strand, within HSERO_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 195,313 + HSERO_RS00925 0.62 -2.1 195,313 + HSERO_RS00925 0.62 -2.3 195,321 - HSERO_RS00925 0.62 -0.9 195,321 - HSERO_RS00925 0.62 +0.3 195,607 - HSERO_RS00925 0.87 -1.9 195,694 - -0.3 195,964 - +0.6 196,005 + -0.5 196,039 - -0.7 196,039 - -0.5 196,316 - -0.5 196,402 - +0.3 196,486 - HSERO_RS00930 0.13 -0.3 196,488 + HSERO_RS00930 0.13 +0.9 196,595 + HSERO_RS00930 0.20 -0.3 196,821 - HSERO_RS00930 0.35 -0.0 196,824 + HSERO_RS00930 0.35 -0.6 196,850 + HSERO_RS00930 0.37 +0.9 196,885 - HSERO_RS00930 0.39 -1.5 196,990 + HSERO_RS00930 0.46 +0.5 197,089 - HSERO_RS00930 0.52 -0.5 197,175 - HSERO_RS00930 0.58 +1.6 197,216 + HSERO_RS00930 0.61 +0.3 197,267 - HSERO_RS00930 0.64 -1.1 197,299 + HSERO_RS00930 0.66 -0.1 197,325 + HSERO_RS00930 0.68 +0.5 197,343 + HSERO_RS00930 0.69 -0.6 197,379 + HSERO_RS00930 0.71 -0.4 197,399 - HSERO_RS00930 0.72 -0.4 197,413 + HSERO_RS00930 0.73 -0.1 197,475 + HSERO_RS00930 0.77 -0.6 197,530 + HSERO_RS00930 0.81 +0.4 197,640 + HSERO_RS00930 0.88 +0.0 197,707 + -0.1 197,715 - -1.1 197,715 - +1.6 197,818 + -0.2 197,858 + -1.8 197,961 - +1.0 197,963 - -1.5 198,023 + -0.6 198,023 + -2.1 198,031 - -0.4 198,233 + HSERO_RS00935 0.19 -0.5 198,321 - HSERO_RS00935 0.23 -0.5 198,445 + HSERO_RS00935 0.29 +0.4 198,459 - HSERO_RS00935 0.29 +0.5 198,482 + HSERO_RS00935 0.30 +0.4 198,490 - HSERO_RS00935 0.31 -0.7 198,605 + HSERO_RS00935 0.36 -0.5 198,613 - HSERO_RS00935 0.37 -0.1 198,685 - HSERO_RS00935 0.40 +1.2 198,685 - HSERO_RS00935 0.40 +0.1 198,685 - HSERO_RS00935 0.40 -0.0 198,685 - HSERO_RS00935 0.40 -1.7 198,695 - HSERO_RS00935 0.40 +0.5 198,719 - HSERO_RS00935 0.42 -1.2
Or see this region's nucleotide sequence