Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00860 and HSERO_RS00865 are separated by 23 nucleotides HSERO_RS00865 and HSERO_RS00870 are separated by 317 nucleotides HSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotides
HSERO_RS00860: HSERO_RS00860 - AraC family transcriptional regulator, at 178,794 to 179,765
_RS00860
HSERO_RS00865: HSERO_RS00865 - AsnC family transcriptional regulator, at 179,789 to 180,253
_RS00865
HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component <small>(from data)</small>, at 180,571 to 181,707
_RS00870
HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946
_RS00875
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 179.594 kb on + strand, within HSERO_RS00860 at 179.848 kb on - strand, within HSERO_RS00865 at 179.880 kb on - strand, within HSERO_RS00865 at 180.021 kb on - strand, within HSERO_RS00865 at 180.029 kb on + strand, within HSERO_RS00865 at 180.037 kb on - strand, within HSERO_RS00865 at 180.037 kb on - strand, within HSERO_RS00865 at 180.073 kb on + strand, within HSERO_RS00865 at 180.086 kb on - strand, within HSERO_RS00865 at 180.101 kb on - strand, within HSERO_RS00865 at 180.111 kb on - strand, within HSERO_RS00865 at 180.115 kb on + strand at 180.116 kb on + strand, within HSERO_RS00865 at 180.118 kb on + strand, within HSERO_RS00865 at 180.161 kb on + strand, within HSERO_RS00865 at 180.194 kb on - strand, within HSERO_RS00865 at 180.247 kb on + strand at 180.404 kb on + strand at 180.404 kb on + strand at 180.407 kb on + strand at 180.412 kb on - strand at 180.422 kb on - strand at 180.422 kb on - strand at 180.422 kb on - strand at 180.472 kb on - strand at 180.472 kb on - strand at 180.473 kb on + strand at 180.581 kb on - strand at 180.584 kb on + strand at 180.717 kb on - strand, within HSERO_RS00870 at 180.862 kb on - strand, within HSERO_RS00870 at 181.089 kb on - strand, within HSERO_RS00870 at 181.146 kb on + strand, within HSERO_RS00870 at 181.172 kb on - strand, within HSERO_RS00870 at 181.185 kb on + strand, within HSERO_RS00870 at 181.267 kb on + strand, within HSERO_RS00870 at 181.275 kb on - strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.589 kb on - strand, within HSERO_RS00870 at 181.763 kb on + strand at 181.763 kb on + strand at 181.824 kb on + strand at 181.906 kb on + strand at 181.914 kb on - strand at 181.972 kb on - strand at 182.195 kb on - strand, within HSERO_RS00875 at 182.253 kb on + strand, within HSERO_RS00875 at 182.276 kb on - strand, within HSERO_RS00875 at 182.299 kb on - strand, within HSERO_RS00875 at 182.321 kb on + strand, within HSERO_RS00875 at 182.531 kb on - strand, within HSERO_RS00875 at 182.558 kb on + strand, within HSERO_RS00875 at 182.625 kb on - strand, within HSERO_RS00875 at 182.653 kb on - strand, within HSERO_RS00875 at 182.655 kb on + strand, within HSERO_RS00875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 179,594 + HSERO_RS00860 0.82 -1.2 179,848 - HSERO_RS00865 0.13 +0.4 179,880 - HSERO_RS00865 0.20 +0.5 180,021 - HSERO_RS00865 0.50 -0.3 180,029 + HSERO_RS00865 0.52 -2.5 180,037 - HSERO_RS00865 0.53 -0.9 180,037 - HSERO_RS00865 0.53 -0.8 180,073 + HSERO_RS00865 0.61 -0.7 180,086 - HSERO_RS00865 0.64 -0.9 180,101 - HSERO_RS00865 0.67 +0.5 180,111 - HSERO_RS00865 0.69 -0.0 180,115 + +0.5 180,116 + HSERO_RS00865 0.70 -0.1 180,118 + HSERO_RS00865 0.71 +0.6 180,161 + HSERO_RS00865 0.80 +1.0 180,194 - HSERO_RS00865 0.87 -1.6 180,247 + +0.3 180,404 + +1.5 180,404 + -0.3 180,407 + +0.8 180,412 - +0.2 180,422 - -1.0 180,422 - +0.8 180,422 - +0.8 180,472 - -0.2 180,472 - -1.5 180,473 + -0.0 180,581 - +0.6 180,584 + -0.5 180,717 - HSERO_RS00870 0.13 -1.5 180,862 - HSERO_RS00870 0.26 +0.5 181,089 - HSERO_RS00870 0.46 +0.9 181,146 + HSERO_RS00870 0.51 -2.5 181,172 - HSERO_RS00870 0.53 -0.6 181,185 + HSERO_RS00870 0.54 +0.1 181,267 + HSERO_RS00870 0.61 -0.2 181,275 - HSERO_RS00870 0.62 +0.1 181,465 + HSERO_RS00870 0.79 -0.5 181,465 + HSERO_RS00870 0.79 +1.3 181,589 - HSERO_RS00870 0.90 -0.9 181,763 + +0.2 181,763 + +1.6 181,824 + +0.5 181,906 + -0.3 181,914 - -0.2 181,972 - +0.8 182,195 - HSERO_RS00875 0.26 +0.2 182,253 + HSERO_RS00875 0.31 +1.4 182,276 - HSERO_RS00875 0.34 -0.4 182,299 - HSERO_RS00875 0.36 +0.7 182,321 + HSERO_RS00875 0.38 -0.6 182,531 - HSERO_RS00875 0.59 +1.5 182,558 + HSERO_RS00875 0.62 -1.0 182,625 - HSERO_RS00875 0.68 +0.3 182,653 - HSERO_RS00875 0.71 -2.1 182,655 + HSERO_RS00875 0.71 +0.3
Or see this region's nucleotide sequence