Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03886

Experiment: PYE with perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00580 and CCNA_03886 overlap by 4 nucleotidesCCNA_03886 and CCNA_00582 are separated by 134 nucleotidesCCNA_00582 and CCNA_00583 are separated by 80 nucleotides CCNA_00580: CCNA_00580 - AAA ATPase domain protein, at 606,207 to 609,290 _00580 CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065 _03886 CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757 _00582 CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205 _00583 Position (kb) 609 610 611 612Strain fitness (log2 ratio) -2 -1 0 1 2 3at 608.293 kb on + strand, within CCNA_00580at 608.294 kb on - strand, within CCNA_00580at 608.294 kb on - strand, within CCNA_00580at 608.294 kb on - strand, within CCNA_00580at 608.301 kb on - strand, within CCNA_00580at 608.338 kb on + strand, within CCNA_00580at 608.355 kb on + strand, within CCNA_00580at 608.355 kb on + strand, within CCNA_00580at 608.355 kb on + strand, within CCNA_00580at 608.355 kb on + strand, within CCNA_00580at 608.363 kb on - strand, within CCNA_00580at 608.363 kb on - strand, within CCNA_00580at 608.363 kb on - strand, within CCNA_00580at 608.363 kb on - strand, within CCNA_00580at 608.391 kb on + strand, within CCNA_00580at 608.401 kb on - strand, within CCNA_00580at 608.418 kb on - strand, within CCNA_00580at 608.489 kb on + strand, within CCNA_00580at 608.499 kb on + strand, within CCNA_00580at 608.546 kb on - strand, within CCNA_00580at 608.573 kb on + strand, within CCNA_00580at 608.620 kb on + strand, within CCNA_00580at 608.625 kb on + strand, within CCNA_00580at 608.625 kb on + strand, within CCNA_00580at 608.625 kb on + strand, within CCNA_00580at 608.633 kb on - strand, within CCNA_00580at 608.633 kb on - strand, within CCNA_00580at 608.660 kb on - strand, within CCNA_00580at 608.693 kb on - strand, within CCNA_00580at 608.745 kb on + strand, within CCNA_00580at 608.760 kb on + strand, within CCNA_00580at 608.760 kb on + strand, within CCNA_00580at 608.760 kb on + strand, within CCNA_00580at 608.760 kb on + strand, within CCNA_00580at 608.768 kb on - strand, within CCNA_00580at 608.768 kb on - strand, within CCNA_00580at 608.770 kb on + strand, within CCNA_00580at 608.770 kb on + strand, within CCNA_00580at 608.770 kb on + strand, within CCNA_00580at 608.770 kb on + strand, within CCNA_00580at 608.770 kb on + strand, within CCNA_00580at 608.778 kb on - strand, within CCNA_00580at 608.778 kb on - strand, within CCNA_00580at 608.778 kb on - strand, within CCNA_00580at 608.802 kb on + strand, within CCNA_00580at 608.817 kb on - strand, within CCNA_00580at 608.827 kb on - strand, within CCNA_00580at 608.827 kb on - strand, within CCNA_00580at 608.889 kb on + strand, within CCNA_00580at 608.910 kb on - strand, within CCNA_00580at 608.933 kb on - strand, within CCNA_00580at 608.933 kb on - strand, within CCNA_00580at 608.945 kb on + strand, within CCNA_00580at 608.953 kb on - strand, within CCNA_00580at 608.955 kb on + strand, within CCNA_00580at 608.963 kb on - strand, within CCNA_00580at 609.006 kb on + strandat 609.023 kb on - strandat 609.059 kb on + strandat 609.067 kb on - strandat 609.067 kb on - strandat 609.140 kb on + strandat 609.196 kb on + strandat 609.216 kb on + strandat 609.237 kb on - strandat 609.237 kb on - strandat 609.249 kb on - strandat 609.280 kb on + strandat 609.306 kb on - strandat 609.307 kb on + strandat 609.309 kb on - strandat 609.329 kb on - strandat 609.339 kb on - strandat 609.440 kb on - strandat 609.440 kb on - strandat 609.476 kb on - strand, within CCNA_03886at 609.476 kb on - strand, within CCNA_03886at 609.480 kb on + strand, within CCNA_03886at 609.488 kb on - strand, within CCNA_03886at 609.568 kb on + strand, within CCNA_03886at 609.594 kb on + strand, within CCNA_03886at 609.602 kb on - strand, within CCNA_03886at 609.631 kb on + strand, within CCNA_03886at 609.632 kb on + strand, within CCNA_03886at 609.640 kb on - strand, within CCNA_03886at 609.655 kb on + strand, within CCNA_03886at 609.655 kb on - strand, within CCNA_03886at 609.745 kb on - strand, within CCNA_03886at 609.745 kb on - strand, within CCNA_03886at 609.747 kb on + strand, within CCNA_03886at 609.798 kb on - strand, within CCNA_03886at 609.846 kb on - strand, within CCNA_03886at 609.856 kb on - strand, within CCNA_03886at 609.903 kb on - strand, within CCNA_03886at 609.926 kb on + strand, within CCNA_03886at 609.926 kb on + strand, within CCNA_03886at 609.963 kb on + strandat 609.971 kb on - strand, within CCNA_03886at 609.971 kb on - strand, within CCNA_03886at 609.986 kb on + strand, within CCNA_03886at 610.035 kb on + strand, within CCNA_03886at 610.035 kb on + strand, within CCNA_03886at 610.043 kb on - strand, within CCNA_03886at 610.043 kb on - strand, within CCNA_03886at 610.043 kb on - strand, within CCNA_03886at 610.062 kb on + strand, within CCNA_03886at 610.070 kb on - strand, within CCNA_03886at 610.095 kb on - strand, within CCNA_03886at 610.103 kb on - strand, within CCNA_03886at 610.136 kb on + strand, within CCNA_03886at 610.144 kb on - strand, within CCNA_03886at 610.158 kb on + strand, within CCNA_03886at 610.229 kb on + strand, within CCNA_03886at 610.276 kb on + strand, within CCNA_03886at 610.321 kb on + strand, within CCNA_03886at 610.327 kb on - strand, within CCNA_03886at 610.362 kb on + strand, within CCNA_03886at 610.364 kb on - strand, within CCNA_03886at 610.412 kb on + strand, within CCNA_03886at 610.415 kb on - strand, within CCNA_03886at 610.415 kb on - strand, within CCNA_03886at 610.420 kb on - strand, within CCNA_03886at 610.476 kb on + strand, within CCNA_03886at 610.492 kb on + strand, within CCNA_03886at 610.552 kb on - strand, within CCNA_03886at 610.554 kb on - strand, within CCNA_03886at 610.592 kb on + strand, within CCNA_03886at 610.594 kb on + strand, within CCNA_03886at 610.639 kb on + strand, within CCNA_03886at 610.683 kb on + strand, within CCNA_03886at 610.705 kb on - strandat 610.711 kb on + strandat 610.719 kb on + strand, within CCNA_03886at 610.864 kb on + strand, within CCNA_03886at 610.871 kb on - strand, within CCNA_03886at 610.872 kb on - strandat 610.879 kb on - strand, within CCNA_03886at 610.882 kb on + strand, within CCNA_03886at 610.905 kb on + strandat 610.909 kb on + strandat 610.913 kb on - strandat 610.913 kb on - strandat 610.928 kb on + strandat 610.934 kb on + strandat 610.937 kb on - strandat 610.966 kb on - strandat 611.051 kb on - strandat 611.063 kb on - strandat 611.144 kb on + strandat 611.152 kb on - strandat 611.152 kb on - strandat 611.214 kb on + strandat 611.214 kb on + strandat 611.214 kb on + strandat 611.226 kb on + strandat 611.229 kb on + strandat 611.244 kb on + strandat 611.248 kb on - strandat 611.284 kb on + strand, within CCNA_00582at 611.284 kb on + strand, within CCNA_00582at 611.292 kb on - strand, within CCNA_00582at 611.292 kb on - strand, within CCNA_00582at 611.307 kb on - strand, within CCNA_00582at 611.324 kb on - strand, within CCNA_00582at 611.326 kb on + strand, within CCNA_00582at 611.326 kb on + strand, within CCNA_00582at 611.333 kb on + strand, within CCNA_00582at 611.422 kb on + strand, within CCNA_00582at 611.440 kb on - strand, within CCNA_00582at 611.457 kb on + strand, within CCNA_00582at 611.457 kb on + strand, within CCNA_00582at 611.465 kb on - strand, within CCNA_00582at 611.470 kb on + strand, within CCNA_00582at 611.471 kb on - strand, within CCNA_00582at 611.478 kb on - strand, within CCNA_00582at 611.478 kb on - strand, within CCNA_00582at 611.483 kb on + strand, within CCNA_00582at 611.483 kb on + strand, within CCNA_00582at 611.483 kb on + strand, within CCNA_00582at 611.501 kb on + strand, within CCNA_00582at 611.501 kb on + strand, within CCNA_00582at 611.501 kb on + strand, within CCNA_00582at 611.509 kb on - strand, within CCNA_00582at 611.509 kb on - strand, within CCNA_00582at 611.581 kb on + strand, within CCNA_00582at 611.586 kb on + strand, within CCNA_00582at 611.586 kb on + strand, within CCNA_00582at 611.589 kb on - strand, within CCNA_00582at 611.589 kb on - strand, within CCNA_00582at 611.589 kb on - strand, within CCNA_00582at 611.698 kb on + strand, within CCNA_00582at 611.706 kb on - strandat 611.717 kb on - strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.779 kb on + strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.787 kb on - strandat 611.798 kb on + strandat 611.806 kb on - strandat 611.812 kb on + strandat 611.820 kb on - strandat 611.820 kb on - strandat 611.820 kb on - strandat 611.830 kb on + strandat 611.889 kb on - strandat 611.896 kb on - strandat 611.903 kb on + strandat 611.973 kb on + strandat 611.973 kb on + strandat 612.027 kb on - strand, within CCNA_00583at 612.042 kb on - strand, within CCNA_00583at 612.047 kb on - strand, within CCNA_00583at 612.057 kb on + strand, within CCNA_00583at 612.057 kb on + strand, within CCNA_00583at 612.065 kb on - strand, within CCNA_00583

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with perchlorate 50 mM
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608,293 + CCNA_00580 0.68 +0.2
608,294 - CCNA_00580 0.68 +0.0
608,294 - CCNA_00580 0.68 +1.5
608,294 - CCNA_00580 0.68 -0.9
608,301 - CCNA_00580 0.68 -0.3
608,338 + CCNA_00580 0.69 -2.5
608,355 + CCNA_00580 0.70 +0.3
608,355 + CCNA_00580 0.70 +0.2
608,355 + CCNA_00580 0.70 -1.3
608,355 + CCNA_00580 0.70 -0.4
608,363 - CCNA_00580 0.70 -0.6
608,363 - CCNA_00580 0.70 +0.7
608,363 - CCNA_00580 0.70 -1.6
608,363 - CCNA_00580 0.70 -1.6
608,391 + CCNA_00580 0.71 -1.6
608,401 - CCNA_00580 0.71 +1.3
608,418 - CCNA_00580 0.72 -0.9
608,489 + CCNA_00580 0.74 -0.6
608,499 + CCNA_00580 0.74 +0.8
608,546 - CCNA_00580 0.76 +0.8
608,573 + CCNA_00580 0.77 -0.9
608,620 + CCNA_00580 0.78 -0.4
608,625 + CCNA_00580 0.78 -0.2
608,625 + CCNA_00580 0.78 -0.7
608,625 + CCNA_00580 0.78 +0.0
608,633 - CCNA_00580 0.79 +0.7
608,633 - CCNA_00580 0.79 -0.0
608,660 - CCNA_00580 0.80 -1.2
608,693 - CCNA_00580 0.81 -1.1
608,745 + CCNA_00580 0.82 -0.3
608,760 + CCNA_00580 0.83 -0.1
608,760 + CCNA_00580 0.83 +1.2
608,760 + CCNA_00580 0.83 -2.3
608,760 + CCNA_00580 0.83 -2.3
608,768 - CCNA_00580 0.83 +0.4
608,768 - CCNA_00580 0.83 +0.5
608,770 + CCNA_00580 0.83 -0.2
608,770 + CCNA_00580 0.83 -1.3
608,770 + CCNA_00580 0.83 -0.8
608,770 + CCNA_00580 0.83 -0.9
608,770 + CCNA_00580 0.83 -1.8
608,778 - CCNA_00580 0.83 -0.3
608,778 - CCNA_00580 0.83 -1.0
608,778 - CCNA_00580 0.83 -0.3
608,802 + CCNA_00580 0.84 -0.2
608,817 - CCNA_00580 0.85 -0.9
608,827 - CCNA_00580 0.85 -0.1
608,827 - CCNA_00580 0.85 +0.9
608,889 + CCNA_00580 0.87 -1.5
608,910 - CCNA_00580 0.88 +0.1
608,933 - CCNA_00580 0.88 -2.0
608,933 - CCNA_00580 0.88 -0.0
608,945 + CCNA_00580 0.89 -1.8
608,953 - CCNA_00580 0.89 +0.8
608,955 + CCNA_00580 0.89 -0.8
608,963 - CCNA_00580 0.89 -0.1
609,006 + -1.3
609,023 - +0.9
609,059 + +0.5
609,067 - -2.4
609,067 - +1.0
609,140 + +0.5
609,196 + +3.5
609,216 + -0.9
609,237 - +0.3
609,237 - -0.1
609,249 - +1.2
609,280 + -1.4
609,306 - -1.2
609,307 + -0.8
609,309 - -0.5
609,329 - +0.3
609,339 - +1.5
609,440 - +3.1
609,440 - -0.3
609,476 - CCNA_03886 0.11 -0.5
609,476 - CCNA_03886 0.11 +1.6
609,480 + CCNA_03886 0.11 +0.5
609,488 - CCNA_03886 0.11 -1.2
609,568 + CCNA_03886 0.16 -0.7
609,594 + CCNA_03886 0.17 -1.4
609,602 - CCNA_03886 0.18 +0.2
609,631 + CCNA_03886 0.19 -1.8
609,632 + CCNA_03886 0.19 -1.6
609,640 - CCNA_03886 0.20 +0.7
609,655 + CCNA_03886 0.21 +0.2
609,655 - CCNA_03886 0.21 -1.1
609,745 - CCNA_03886 0.26 -0.8
609,745 - CCNA_03886 0.26 -0.6
609,747 + CCNA_03886 0.26 -0.1
609,798 - CCNA_03886 0.29 -0.3
609,846 - CCNA_03886 0.31 +1.2
609,856 - CCNA_03886 0.32 -0.9
609,903 - CCNA_03886 0.35 +0.3
609,926 + CCNA_03886 0.36 +0.3
609,926 + CCNA_03886 0.36 +0.6
609,963 + +3.1
609,971 - CCNA_03886 0.38 -1.4
609,971 - CCNA_03886 0.38 -0.7
609,986 + CCNA_03886 0.39 +0.9
610,035 + CCNA_03886 0.42 +0.7
610,035 + CCNA_03886 0.42 +0.1
610,043 - CCNA_03886 0.42 +0.3
610,043 - CCNA_03886 0.42 +0.2
610,043 - CCNA_03886 0.42 -2.2
610,062 + CCNA_03886 0.44 -1.1
610,070 - CCNA_03886 0.44 +0.2
610,095 - CCNA_03886 0.45 +0.2
610,103 - CCNA_03886 0.46 +0.2
610,136 + CCNA_03886 0.48 -2.3
610,144 - CCNA_03886 0.48 -1.5
610,158 + CCNA_03886 0.49 -1.0
610,229 + CCNA_03886 0.53 -2.7
610,276 + CCNA_03886 0.56 -1.3
610,321 + CCNA_03886 0.58 -0.2
610,327 - CCNA_03886 0.58 +1.2
610,362 + CCNA_03886 0.60 -0.8
610,364 - CCNA_03886 0.61 +0.3
610,412 + CCNA_03886 0.63 -1.1
610,415 - CCNA_03886 0.63 -2.5
610,415 - CCNA_03886 0.63 +1.0
610,420 - CCNA_03886 0.64 -1.3
610,476 + CCNA_03886 0.67 +0.1
610,492 + CCNA_03886 0.68 -0.6
610,552 - CCNA_03886 0.71 -0.8
610,554 - CCNA_03886 0.71 +0.5
610,592 + CCNA_03886 0.73 +0.1
610,594 + CCNA_03886 0.73 -1.2
610,639 + CCNA_03886 0.76 -0.5
610,683 + CCNA_03886 0.78 -1.6
610,705 - +0.3
610,711 + +0.9
610,719 + CCNA_03886 0.80 -0.1
610,864 + CCNA_03886 0.89 -1.0
610,871 - CCNA_03886 0.89 -2.1
610,872 - +2.2
610,879 - CCNA_03886 0.89 +0.4
610,882 + CCNA_03886 0.90 -1.4
610,905 + -0.3
610,909 + +0.8
610,913 - +1.2
610,913 - -1.3
610,928 + -1.3
610,934 + +1.5
610,937 - +0.9
610,966 - -0.1
611,051 - -0.8
611,063 - +0.2
611,144 + +0.9
611,152 - -0.2
611,152 - +1.5
611,214 + -0.0
611,214 + +0.9
611,214 + +0.3
611,226 + +0.2
611,229 + +0.8
611,244 + -0.2
611,248 - -0.3
611,284 + CCNA_00582 0.15 -0.2
611,284 + CCNA_00582 0.15 +1.1
611,292 - CCNA_00582 0.16 -0.6
611,292 - CCNA_00582 0.16 -1.0
611,307 - CCNA_00582 0.19 +0.4
611,324 - CCNA_00582 0.22 +0.5
611,326 + CCNA_00582 0.23 -0.1
611,326 + CCNA_00582 0.23 -0.4
611,333 + CCNA_00582 0.24 -1.9
611,422 + CCNA_00582 0.40 +0.5
611,440 - CCNA_00582 0.43 +0.6
611,457 + CCNA_00582 0.46 +0.3
611,457 + CCNA_00582 0.46 -0.6
611,465 - CCNA_00582 0.47 +0.6
611,470 + CCNA_00582 0.48 +1.7
611,471 - CCNA_00582 0.49 +0.0
611,478 - CCNA_00582 0.50 -2.0
611,478 - CCNA_00582 0.50 -0.8
611,483 + CCNA_00582 0.51 +0.1
611,483 + CCNA_00582 0.51 -0.5
611,483 + CCNA_00582 0.51 +0.7
611,501 + CCNA_00582 0.54 +1.5
611,501 + CCNA_00582 0.54 +1.3
611,501 + CCNA_00582 0.54 +0.3
611,509 - CCNA_00582 0.55 -0.5
611,509 - CCNA_00582 0.55 -0.4
611,581 + CCNA_00582 0.68 +0.7
611,586 + CCNA_00582 0.69 -1.0
611,586 + CCNA_00582 0.69 +0.6
611,589 - CCNA_00582 0.70 -0.7
611,589 - CCNA_00582 0.70 +2.2
611,589 - CCNA_00582 0.70 -0.7
611,698 + CCNA_00582 0.89 +1.6
611,706 - -1.3
611,717 - +2.8
611,779 + -0.2
611,779 + -0.1
611,779 + -0.3
611,779 + +0.4
611,779 + -0.1
611,779 + -0.5
611,779 + -0.2
611,779 + -2.3
611,779 + +1.0
611,779 + +0.0
611,779 + +2.7
611,779 + -0.6
611,779 + -0.3
611,779 + +0.0
611,779 + -0.2
611,779 + +0.8
611,779 + -1.3
611,779 + +0.6
611,779 + -0.5
611,779 + +1.4
611,779 + +0.7
611,779 + +0.3
611,779 + +2.6
611,779 + +0.2
611,779 + -0.1
611,779 + -0.1
611,779 + -0.7
611,779 + -0.2
611,779 + +0.9
611,787 - -0.4
611,787 - -0.6
611,787 - -1.3
611,787 - +1.9
611,787 - +1.5
611,787 - -0.1
611,787 - -0.6
611,787 - +0.5
611,787 - +1.3
611,787 - +1.2
611,787 - +0.9
611,787 - -1.2
611,787 - -0.0
611,787 - +2.0
611,787 - -1.8
611,787 - -1.2
611,787 - +1.6
611,787 - -0.7
611,787 - +1.3
611,787 - -1.2
611,787 - -0.4
611,787 - -1.2
611,787 - -1.6
611,787 - -0.3
611,787 - -1.0
611,787 - -1.6
611,798 + -1.3
611,806 - -0.2
611,812 + +3.1
611,820 - -1.2
611,820 - +0.0
611,820 - +0.5
611,830 + +0.0
611,889 - -2.2
611,896 - +0.2
611,903 + -0.4
611,973 + +0.1
611,973 + +0.4
612,027 - CCNA_00583 0.14 +0.3
612,042 - CCNA_00583 0.15 +3.5
612,047 - CCNA_00583 0.15 -1.4
612,057 + CCNA_00583 0.16 +0.1
612,057 + CCNA_00583 0.16 +0.3
612,065 - CCNA_00583 0.17 +1.8

Or see this region's nucleotide sequence