Experiment: PYE with perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00580 and CCNA_03886 overlap by 4 nucleotides CCNA_03886 and CCNA_00582 are separated by 134 nucleotides CCNA_00582 and CCNA_00583 are separated by 80 nucleotides
CCNA_00580: CCNA_00580 - AAA ATPase domain protein, at 606,207 to 609,290
_00580
CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065
_03886
CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757
_00582
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 608.293 kb on + strand, within CCNA_00580 at 608.294 kb on - strand, within CCNA_00580 at 608.294 kb on - strand, within CCNA_00580 at 608.294 kb on - strand, within CCNA_00580 at 608.301 kb on - strand, within CCNA_00580 at 608.338 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.355 kb on + strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.363 kb on - strand, within CCNA_00580 at 608.391 kb on + strand, within CCNA_00580 at 608.401 kb on - strand, within CCNA_00580 at 608.418 kb on - strand, within CCNA_00580 at 608.489 kb on + strand, within CCNA_00580 at 608.499 kb on + strand, within CCNA_00580 at 608.546 kb on - strand, within CCNA_00580 at 608.573 kb on + strand, within CCNA_00580 at 608.620 kb on + strand, within CCNA_00580 at 608.625 kb on + strand, within CCNA_00580 at 608.625 kb on + strand, within CCNA_00580 at 608.625 kb on + strand, within CCNA_00580 at 608.633 kb on - strand, within CCNA_00580 at 608.633 kb on - strand, within CCNA_00580 at 608.660 kb on - strand, within CCNA_00580 at 608.693 kb on - strand, within CCNA_00580 at 608.745 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.760 kb on + strand, within CCNA_00580 at 608.768 kb on - strand, within CCNA_00580 at 608.768 kb on - strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.770 kb on + strand, within CCNA_00580 at 608.778 kb on - strand, within CCNA_00580 at 608.778 kb on - strand, within CCNA_00580 at 608.778 kb on - strand, within CCNA_00580 at 608.802 kb on + strand, within CCNA_00580 at 608.817 kb on - strand, within CCNA_00580 at 608.827 kb on - strand, within CCNA_00580 at 608.827 kb on - strand, within CCNA_00580 at 608.889 kb on + strand, within CCNA_00580 at 608.910 kb on - strand, within CCNA_00580 at 608.933 kb on - strand, within CCNA_00580 at 608.933 kb on - strand, within CCNA_00580 at 608.945 kb on + strand, within CCNA_00580 at 608.953 kb on - strand, within CCNA_00580 at 608.955 kb on + strand, within CCNA_00580 at 608.963 kb on - strand, within CCNA_00580 at 609.006 kb on + strand at 609.023 kb on - strand at 609.059 kb on + strand at 609.067 kb on - strand at 609.067 kb on - strand at 609.140 kb on + strand at 609.196 kb on + strand at 609.216 kb on + strand at 609.237 kb on - strand at 609.237 kb on - strand at 609.249 kb on - strand at 609.280 kb on + strand at 609.306 kb on - strand at 609.307 kb on + strand at 609.309 kb on - strand at 609.329 kb on - strand at 609.339 kb on - strand at 609.440 kb on - strand at 609.440 kb on - strand at 609.476 kb on - strand, within CCNA_03886 at 609.476 kb on - strand, within CCNA_03886 at 609.480 kb on + strand, within CCNA_03886 at 609.488 kb on - strand, within CCNA_03886 at 609.568 kb on + strand, within CCNA_03886 at 609.594 kb on + strand, within CCNA_03886 at 609.602 kb on - strand, within CCNA_03886 at 609.631 kb on + strand, within CCNA_03886 at 609.632 kb on + strand, within CCNA_03886 at 609.640 kb on - strand, within CCNA_03886 at 609.655 kb on + strand, within CCNA_03886 at 609.655 kb on - strand, within CCNA_03886 at 609.745 kb on - strand, within CCNA_03886 at 609.745 kb on - strand, within CCNA_03886 at 609.747 kb on + strand, within CCNA_03886 at 609.798 kb on - strand, within CCNA_03886 at 609.846 kb on - strand, within CCNA_03886 at 609.856 kb on - strand, within CCNA_03886 at 609.903 kb on - strand, within CCNA_03886 at 609.926 kb on + strand, within CCNA_03886 at 609.926 kb on + strand, within CCNA_03886 at 609.963 kb on + strand at 609.971 kb on - strand, within CCNA_03886 at 609.971 kb on - strand, within CCNA_03886 at 609.986 kb on + strand, within CCNA_03886 at 610.035 kb on + strand, within CCNA_03886 at 610.035 kb on + strand, within CCNA_03886 at 610.043 kb on - strand, within CCNA_03886 at 610.043 kb on - strand, within CCNA_03886 at 610.043 kb on - strand, within CCNA_03886 at 610.062 kb on + strand, within CCNA_03886 at 610.070 kb on - strand, within CCNA_03886 at 610.095 kb on - strand, within CCNA_03886 at 610.103 kb on - strand, within CCNA_03886 at 610.136 kb on + strand, within CCNA_03886 at 610.144 kb on - strand, within CCNA_03886 at 610.158 kb on + strand, within CCNA_03886 at 610.229 kb on + strand, within CCNA_03886 at 610.276 kb on + strand, within CCNA_03886 at 610.321 kb on + strand, within CCNA_03886 at 610.327 kb on - strand, within CCNA_03886 at 610.362 kb on + strand, within CCNA_03886 at 610.364 kb on - strand, within CCNA_03886 at 610.412 kb on + strand, within CCNA_03886 at 610.415 kb on - strand, within CCNA_03886 at 610.415 kb on - strand, within CCNA_03886 at 610.420 kb on - strand, within CCNA_03886 at 610.476 kb on + strand, within CCNA_03886 at 610.492 kb on + strand, within CCNA_03886 at 610.552 kb on - strand, within CCNA_03886 at 610.554 kb on - strand, within CCNA_03886 at 610.592 kb on + strand, within CCNA_03886 at 610.594 kb on + strand, within CCNA_03886 at 610.639 kb on + strand, within CCNA_03886 at 610.683 kb on + strand, within CCNA_03886 at 610.705 kb on - strand at 610.711 kb on + strand at 610.719 kb on + strand, within CCNA_03886 at 610.864 kb on + strand, within CCNA_03886 at 610.871 kb on - strand, within CCNA_03886 at 610.872 kb on - strand at 610.879 kb on - strand, within CCNA_03886 at 610.882 kb on + strand, within CCNA_03886 at 610.905 kb on + strand at 610.909 kb on + strand at 610.913 kb on - strand at 610.913 kb on - strand at 610.928 kb on + strand at 610.934 kb on + strand at 610.937 kb on - strand at 610.966 kb on - strand at 611.051 kb on - strand at 611.063 kb on - strand at 611.144 kb on + strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.226 kb on + strand at 611.229 kb on + strand at 611.244 kb on + strand at 611.248 kb on - strand at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.307 kb on - strand, within CCNA_00582 at 611.324 kb on - strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.333 kb on + strand, within CCNA_00582 at 611.422 kb on + strand, within CCNA_00582 at 611.440 kb on - strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.465 kb on - strand, within CCNA_00582 at 611.470 kb on + strand, within CCNA_00582 at 611.471 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.581 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.698 kb on + strand, within CCNA_00582 at 611.706 kb on - strand at 611.717 kb on - strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.798 kb on + strand at 611.806 kb on - strand at 611.812 kb on + strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.830 kb on + strand at 611.889 kb on - strand at 611.896 kb on - strand at 611.903 kb on + strand at 611.973 kb on + strand at 611.973 kb on + strand at 612.027 kb on - strand, within CCNA_00583 at 612.042 kb on - strand, within CCNA_00583 at 612.047 kb on - strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.065 kb on - strand, within CCNA_00583
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with perchlorate 50 mM remove 608,293 + CCNA_00580 0.68 +0.2 608,294 - CCNA_00580 0.68 +0.0 608,294 - CCNA_00580 0.68 +1.5 608,294 - CCNA_00580 0.68 -0.9 608,301 - CCNA_00580 0.68 -0.3 608,338 + CCNA_00580 0.69 -2.5 608,355 + CCNA_00580 0.70 +0.3 608,355 + CCNA_00580 0.70 +0.2 608,355 + CCNA_00580 0.70 -1.3 608,355 + CCNA_00580 0.70 -0.4 608,363 - CCNA_00580 0.70 -0.6 608,363 - CCNA_00580 0.70 +0.7 608,363 - CCNA_00580 0.70 -1.6 608,363 - CCNA_00580 0.70 -1.6 608,391 + CCNA_00580 0.71 -1.6 608,401 - CCNA_00580 0.71 +1.3 608,418 - CCNA_00580 0.72 -0.9 608,489 + CCNA_00580 0.74 -0.6 608,499 + CCNA_00580 0.74 +0.8 608,546 - CCNA_00580 0.76 +0.8 608,573 + CCNA_00580 0.77 -0.9 608,620 + CCNA_00580 0.78 -0.4 608,625 + CCNA_00580 0.78 -0.2 608,625 + CCNA_00580 0.78 -0.7 608,625 + CCNA_00580 0.78 +0.0 608,633 - CCNA_00580 0.79 +0.7 608,633 - CCNA_00580 0.79 -0.0 608,660 - CCNA_00580 0.80 -1.2 608,693 - CCNA_00580 0.81 -1.1 608,745 + CCNA_00580 0.82 -0.3 608,760 + CCNA_00580 0.83 -0.1 608,760 + CCNA_00580 0.83 +1.2 608,760 + CCNA_00580 0.83 -2.3 608,760 + CCNA_00580 0.83 -2.3 608,768 - CCNA_00580 0.83 +0.4 608,768 - CCNA_00580 0.83 +0.5 608,770 + CCNA_00580 0.83 -0.2 608,770 + CCNA_00580 0.83 -1.3 608,770 + CCNA_00580 0.83 -0.8 608,770 + CCNA_00580 0.83 -0.9 608,770 + CCNA_00580 0.83 -1.8 608,778 - CCNA_00580 0.83 -0.3 608,778 - CCNA_00580 0.83 -1.0 608,778 - CCNA_00580 0.83 -0.3 608,802 + CCNA_00580 0.84 -0.2 608,817 - CCNA_00580 0.85 -0.9 608,827 - CCNA_00580 0.85 -0.1 608,827 - CCNA_00580 0.85 +0.9 608,889 + CCNA_00580 0.87 -1.5 608,910 - CCNA_00580 0.88 +0.1 608,933 - CCNA_00580 0.88 -2.0 608,933 - CCNA_00580 0.88 -0.0 608,945 + CCNA_00580 0.89 -1.8 608,953 - CCNA_00580 0.89 +0.8 608,955 + CCNA_00580 0.89 -0.8 608,963 - CCNA_00580 0.89 -0.1 609,006 + -1.3 609,023 - +0.9 609,059 + +0.5 609,067 - -2.4 609,067 - +1.0 609,140 + +0.5 609,196 + +3.5 609,216 + -0.9 609,237 - +0.3 609,237 - -0.1 609,249 - +1.2 609,280 + -1.4 609,306 - -1.2 609,307 + -0.8 609,309 - -0.5 609,329 - +0.3 609,339 - +1.5 609,440 - +3.1 609,440 - -0.3 609,476 - CCNA_03886 0.11 -0.5 609,476 - CCNA_03886 0.11 +1.6 609,480 + CCNA_03886 0.11 +0.5 609,488 - CCNA_03886 0.11 -1.2 609,568 + CCNA_03886 0.16 -0.7 609,594 + CCNA_03886 0.17 -1.4 609,602 - CCNA_03886 0.18 +0.2 609,631 + CCNA_03886 0.19 -1.8 609,632 + CCNA_03886 0.19 -1.6 609,640 - CCNA_03886 0.20 +0.7 609,655 + CCNA_03886 0.21 +0.2 609,655 - CCNA_03886 0.21 -1.1 609,745 - CCNA_03886 0.26 -0.8 609,745 - CCNA_03886 0.26 -0.6 609,747 + CCNA_03886 0.26 -0.1 609,798 - CCNA_03886 0.29 -0.3 609,846 - CCNA_03886 0.31 +1.2 609,856 - CCNA_03886 0.32 -0.9 609,903 - CCNA_03886 0.35 +0.3 609,926 + CCNA_03886 0.36 +0.3 609,926 + CCNA_03886 0.36 +0.6 609,963 + +3.1 609,971 - CCNA_03886 0.38 -1.4 609,971 - CCNA_03886 0.38 -0.7 609,986 + CCNA_03886 0.39 +0.9 610,035 + CCNA_03886 0.42 +0.7 610,035 + CCNA_03886 0.42 +0.1 610,043 - CCNA_03886 0.42 +0.3 610,043 - CCNA_03886 0.42 +0.2 610,043 - CCNA_03886 0.42 -2.2 610,062 + CCNA_03886 0.44 -1.1 610,070 - CCNA_03886 0.44 +0.2 610,095 - CCNA_03886 0.45 +0.2 610,103 - CCNA_03886 0.46 +0.2 610,136 + CCNA_03886 0.48 -2.3 610,144 - CCNA_03886 0.48 -1.5 610,158 + CCNA_03886 0.49 -1.0 610,229 + CCNA_03886 0.53 -2.7 610,276 + CCNA_03886 0.56 -1.3 610,321 + CCNA_03886 0.58 -0.2 610,327 - CCNA_03886 0.58 +1.2 610,362 + CCNA_03886 0.60 -0.8 610,364 - CCNA_03886 0.61 +0.3 610,412 + CCNA_03886 0.63 -1.1 610,415 - CCNA_03886 0.63 -2.5 610,415 - CCNA_03886 0.63 +1.0 610,420 - CCNA_03886 0.64 -1.3 610,476 + CCNA_03886 0.67 +0.1 610,492 + CCNA_03886 0.68 -0.6 610,552 - CCNA_03886 0.71 -0.8 610,554 - CCNA_03886 0.71 +0.5 610,592 + CCNA_03886 0.73 +0.1 610,594 + CCNA_03886 0.73 -1.2 610,639 + CCNA_03886 0.76 -0.5 610,683 + CCNA_03886 0.78 -1.6 610,705 - +0.3 610,711 + +0.9 610,719 + CCNA_03886 0.80 -0.1 610,864 + CCNA_03886 0.89 -1.0 610,871 - CCNA_03886 0.89 -2.1 610,872 - +2.2 610,879 - CCNA_03886 0.89 +0.4 610,882 + CCNA_03886 0.90 -1.4 610,905 + -0.3 610,909 + +0.8 610,913 - +1.2 610,913 - -1.3 610,928 + -1.3 610,934 + +1.5 610,937 - +0.9 610,966 - -0.1 611,051 - -0.8 611,063 - +0.2 611,144 + +0.9 611,152 - -0.2 611,152 - +1.5 611,214 + -0.0 611,214 + +0.9 611,214 + +0.3 611,226 + +0.2 611,229 + +0.8 611,244 + -0.2 611,248 - -0.3 611,284 + CCNA_00582 0.15 -0.2 611,284 + CCNA_00582 0.15 +1.1 611,292 - CCNA_00582 0.16 -0.6 611,292 - CCNA_00582 0.16 -1.0 611,307 - CCNA_00582 0.19 +0.4 611,324 - CCNA_00582 0.22 +0.5 611,326 + CCNA_00582 0.23 -0.1 611,326 + CCNA_00582 0.23 -0.4 611,333 + CCNA_00582 0.24 -1.9 611,422 + CCNA_00582 0.40 +0.5 611,440 - CCNA_00582 0.43 +0.6 611,457 + CCNA_00582 0.46 +0.3 611,457 + CCNA_00582 0.46 -0.6 611,465 - CCNA_00582 0.47 +0.6 611,470 + CCNA_00582 0.48 +1.7 611,471 - CCNA_00582 0.49 +0.0 611,478 - CCNA_00582 0.50 -2.0 611,478 - CCNA_00582 0.50 -0.8 611,483 + CCNA_00582 0.51 +0.1 611,483 + CCNA_00582 0.51 -0.5 611,483 + CCNA_00582 0.51 +0.7 611,501 + CCNA_00582 0.54 +1.5 611,501 + CCNA_00582 0.54 +1.3 611,501 + CCNA_00582 0.54 +0.3 611,509 - CCNA_00582 0.55 -0.5 611,509 - CCNA_00582 0.55 -0.4 611,581 + CCNA_00582 0.68 +0.7 611,586 + CCNA_00582 0.69 -1.0 611,586 + CCNA_00582 0.69 +0.6 611,589 - CCNA_00582 0.70 -0.7 611,589 - CCNA_00582 0.70 +2.2 611,589 - CCNA_00582 0.70 -0.7 611,698 + CCNA_00582 0.89 +1.6 611,706 - -1.3 611,717 - +2.8 611,779 + -0.2 611,779 + -0.1 611,779 + -0.3 611,779 + +0.4 611,779 + -0.1 611,779 + -0.5 611,779 + -0.2 611,779 + -2.3 611,779 + +1.0 611,779 + +0.0 611,779 + +2.7 611,779 + -0.6 611,779 + -0.3 611,779 + +0.0 611,779 + -0.2 611,779 + +0.8 611,779 + -1.3 611,779 + +0.6 611,779 + -0.5 611,779 + +1.4 611,779 + +0.7 611,779 + +0.3 611,779 + +2.6 611,779 + +0.2 611,779 + -0.1 611,779 + -0.1 611,779 + -0.7 611,779 + -0.2 611,779 + +0.9 611,787 - -0.4 611,787 - -0.6 611,787 - -1.3 611,787 - +1.9 611,787 - +1.5 611,787 - -0.1 611,787 - -0.6 611,787 - +0.5 611,787 - +1.3 611,787 - +1.2 611,787 - +0.9 611,787 - -1.2 611,787 - -0.0 611,787 - +2.0 611,787 - -1.8 611,787 - -1.2 611,787 - +1.6 611,787 - -0.7 611,787 - +1.3 611,787 - -1.2 611,787 - -0.4 611,787 - -1.2 611,787 - -1.6 611,787 - -0.3 611,787 - -1.0 611,787 - -1.6 611,798 + -1.3 611,806 - -0.2 611,812 + +3.1 611,820 - -1.2 611,820 - +0.0 611,820 - +0.5 611,830 + +0.0 611,889 - -2.2 611,896 - +0.2 611,903 + -0.4 611,973 + +0.1 611,973 + +0.4 612,027 - CCNA_00583 0.14 +0.3 612,042 - CCNA_00583 0.15 +3.5 612,047 - CCNA_00583 0.15 -1.4 612,057 + CCNA_00583 0.16 +0.1 612,057 + CCNA_00583 0.16 +0.3 612,065 - CCNA_00583 0.17 +1.8
Or see this region's nucleotide sequence