Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02760

Experiment: PYE with perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02759 and CCNA_02760 are separated by 60 nucleotidesCCNA_02760 and CCNA_03976 overlap by 1 nucleotidesCCNA_03976 and CCNA_02761 overlap by 11 nucleotidesCCNA_02761 and CCNA_02762 are separated by 205 nucleotides CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135 _02759 CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462 _02760 CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683 _03976 CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918 _02761 CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789 _02762 Position (kb) 2923 2924Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2922.251 kb on - strandat 2922.264 kb on - strandat 2922.268 kb on + strandat 2922.271 kb on - strandat 2922.271 kb on - strandat 2922.301 kb on + strandat 2922.313 kb on + strandat 2922.313 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.350 kb on + strandat 2922.355 kb on + strandat 2922.355 kb on + strandat 2922.359 kb on + strandat 2922.359 kb on + strandat 2922.362 kb on - strandat 2922.363 kb on - strandat 2922.364 kb on + strandat 2922.364 kb on + strandat 2922.364 kb on + strandat 2922.364 kb on + strandat 2922.372 kb on - strandat 2922.372 kb on - strandat 2922.379 kb on + strandat 2923.081 kb on + strandat 2923.116 kb on - strandat 2923.267 kb on + strand, within CCNA_02760at 2923.277 kb on + strand, within CCNA_02760at 2923.287 kb on + strand, within CCNA_02760at 2923.390 kb on + strand, within CCNA_02760at 2923.408 kb on - strand, within CCNA_02760at 2923.418 kb on - strand, within CCNA_02760at 2923.421 kb on - strand, within CCNA_02760at 2923.442 kb on + strandat 2923.450 kb on - strandat 2923.467 kb on + strandat 2923.477 kb on - strandat 2923.498 kb on - strand, within CCNA_03976at 2923.663 kb on + strandat 2923.663 kb on + strandat 2923.669 kb on + strandat 2923.670 kb on + strandat 2923.678 kb on - strandat 2923.684 kb on + strandat 2923.684 kb on + strandat 2923.684 kb on + strandat 2923.707 kb on + strand, within CCNA_02761at 2923.722 kb on - strand, within CCNA_02761at 2923.732 kb on - strand, within CCNA_02761at 2923.756 kb on + strand, within CCNA_02761at 2923.759 kb on + strand, within CCNA_02761at 2923.783 kb on + strand, within CCNA_02761at 2923.802 kb on + strand, within CCNA_02761at 2923.826 kb on - strand, within CCNA_02761at 2923.841 kb on + strand, within CCNA_02761at 2923.849 kb on - strand, within CCNA_02761at 2923.856 kb on + strand, within CCNA_02761at 2923.864 kb on - strand, within CCNA_02761at 2923.864 kb on - strand, within CCNA_02761at 2923.912 kb on + strandat 2923.912 kb on + strandat 2923.915 kb on - strandat 2923.915 kb on - strandat 2923.968 kb on - strandat 2923.995 kb on + strandat 2923.995 kb on + strandat 2923.997 kb on + strandat 2923.997 kb on + strandat 2924.003 kb on - strandat 2924.003 kb on - strandat 2924.003 kb on - strandat 2924.112 kb on + strandat 2924.120 kb on - strandat 2924.120 kb on - strandat 2924.189 kb on - strandat 2924.193 kb on + strand, within CCNA_02762at 2924.238 kb on - strand, within CCNA_02762at 2924.238 kb on - strand, within CCNA_02762at 2924.243 kb on - strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.307 kb on - strand, within CCNA_02762at 2924.307 kb on - strand, within CCNA_02762at 2924.323 kb on - strand, within CCNA_02762at 2924.368 kb on - strand, within CCNA_02762at 2924.368 kb on - strand, within CCNA_02762at 2924.368 kb on - strand, within CCNA_02762at 2924.368 kb on - strand, within CCNA_02762at 2924.381 kb on + strand, within CCNA_02762at 2924.393 kb on + strand, within CCNA_02762at 2924.403 kb on - strand, within CCNA_02762at 2924.408 kb on - strand, within CCNA_02762at 2924.423 kb on + strand, within CCNA_02762at 2924.433 kb on + strand, within CCNA_02762at 2924.441 kb on - strand, within CCNA_02762

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with perchlorate 50 mM
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2,922,251 - -1.3
2,922,264 - -0.0
2,922,268 + +1.7
2,922,271 - -0.2
2,922,271 - +0.6
2,922,301 + +0.7
2,922,313 + +2.0
2,922,313 + +1.5
2,922,350 + +1.6
2,922,350 + +1.9
2,922,350 + +1.1
2,922,350 + +0.1
2,922,350 + +0.3
2,922,350 + -1.5
2,922,355 + -0.3
2,922,355 + -1.5
2,922,359 + +1.3
2,922,359 + +0.1
2,922,362 - +1.0
2,922,363 - +1.1
2,922,364 + +1.2
2,922,364 + +1.5
2,922,364 + +1.6
2,922,364 + +1.8
2,922,372 - +0.8
2,922,372 - +0.3
2,922,379 + +1.5
2,923,081 + +1.5
2,923,116 - +0.3
2,923,267 + CCNA_02760 0.27 +1.3
2,923,277 + CCNA_02760 0.30 +2.2
2,923,287 + CCNA_02760 0.34 +2.9
2,923,390 + CCNA_02760 0.73 +1.5
2,923,408 - CCNA_02760 0.79 +0.4
2,923,418 - CCNA_02760 0.83 -1.4
2,923,421 - CCNA_02760 0.84 +0.9
2,923,442 + +1.7
2,923,450 - -1.3
2,923,467 + +1.6
2,923,477 - +0.3
2,923,498 - CCNA_03976 0.16 -0.0
2,923,663 + +1.5
2,923,663 + +1.5
2,923,669 + +1.6
2,923,670 + +1.6
2,923,678 - -0.7
2,923,684 + +1.5
2,923,684 + +1.1
2,923,684 + +2.0
2,923,707 + CCNA_02761 0.14 +1.0
2,923,722 - CCNA_02761 0.20 -0.4
2,923,732 - CCNA_02761 0.24 -1.8
2,923,756 + CCNA_02761 0.34 +2.4
2,923,759 + CCNA_02761 0.35 +3.2
2,923,783 + CCNA_02761 0.45 +0.8
2,923,802 + CCNA_02761 0.52 +0.9
2,923,826 - CCNA_02761 0.62 +0.6
2,923,841 + CCNA_02761 0.68 +1.3
2,923,849 - CCNA_02761 0.72 -0.3
2,923,856 + CCNA_02761 0.74 +2.1
2,923,864 - CCNA_02761 0.78 -0.6
2,923,864 - CCNA_02761 0.78 +0.0
2,923,912 + +1.5
2,923,912 + +1.0
2,923,915 - +1.3
2,923,915 - -0.9
2,923,968 - +0.6
2,923,995 + -1.7
2,923,995 + -0.4
2,923,997 + +1.0
2,923,997 + +0.4
2,924,003 - -1.6
2,924,003 - -0.2
2,924,003 - -0.3
2,924,112 + +0.2
2,924,120 - +0.5
2,924,120 - -0.6
2,924,189 - -0.5
2,924,193 + CCNA_02762 0.10 -0.3
2,924,238 - CCNA_02762 0.17 +1.1
2,924,238 - CCNA_02762 0.17 +0.3
2,924,243 - CCNA_02762 0.18 +0.8
2,924,299 + CCNA_02762 0.26 -0.4
2,924,299 + CCNA_02762 0.26 +0.5
2,924,299 + CCNA_02762 0.26 +1.4
2,924,299 + CCNA_02762 0.26 +0.1
2,924,307 - CCNA_02762 0.27 +0.2
2,924,307 - CCNA_02762 0.27 +0.8
2,924,323 - CCNA_02762 0.30 +1.1
2,924,368 - CCNA_02762 0.37 +0.3
2,924,368 - CCNA_02762 0.37 +0.6
2,924,368 - CCNA_02762 0.37 -0.6
2,924,368 - CCNA_02762 0.37 +0.4
2,924,381 + CCNA_02762 0.39 -0.8
2,924,393 + CCNA_02762 0.40 +1.2
2,924,403 - CCNA_02762 0.42 -1.8
2,924,408 - CCNA_02762 0.43 -2.1
2,924,423 + CCNA_02762 0.45 +1.0
2,924,433 + CCNA_02762 0.46 +0.7
2,924,441 - CCNA_02762 0.48 +0.6

Or see this region's nucleotide sequence