Experiment: PYE with perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02564 and CCNA_02565 are separated by 141 nucleotides CCNA_02565 and CCNA_02566 are separated by 86 nucleotides
CCNA_02564: CCNA_02564 - acyl-CoA dehydrogenase, short-chain specific, at 2,712,015 to 2,713,130
_02564
CCNA_02565: CCNA_02565 - hypothetical protein, at 2,713,272 to 2,713,823
_02565
CCNA_02566: CCNA_02566 - membrane alanine aminopeptidase, at 2,713,910 to 2,716,501
_02566
Position (kb)
2713
2714 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2712.289 kb on + strand, within CCNA_02564 at 2712.325 kb on - strand, within CCNA_02564 at 2712.376 kb on - strand, within CCNA_02564 at 2712.400 kb on - strand, within CCNA_02564 at 2712.439 kb on - strand, within CCNA_02564 at 2712.458 kb on - strand at 2712.477 kb on + strand, within CCNA_02564 at 2712.501 kb on + strand, within CCNA_02564 at 2712.556 kb on - strand, within CCNA_02564 at 2712.557 kb on - strand, within CCNA_02564 at 2712.566 kb on - strand, within CCNA_02564 at 2712.587 kb on + strand, within CCNA_02564 at 2712.587 kb on + strand, within CCNA_02564 at 2712.598 kb on + strand, within CCNA_02564 at 2712.603 kb on + strand, within CCNA_02564 at 2712.693 kb on - strand, within CCNA_02564 at 2712.711 kb on + strand, within CCNA_02564 at 2712.754 kb on - strand, within CCNA_02564 at 2712.774 kb on - strand, within CCNA_02564 at 2712.815 kb on + strand, within CCNA_02564 at 2712.830 kb on - strand, within CCNA_02564 at 2712.839 kb on - strand, within CCNA_02564 at 2712.846 kb on - strand, within CCNA_02564 at 2712.849 kb on + strand, within CCNA_02564 at 2712.849 kb on + strand, within CCNA_02564 at 2712.857 kb on - strand, within CCNA_02564 at 2712.889 kb on + strand, within CCNA_02564 at 2712.897 kb on - strand, within CCNA_02564 at 2712.897 kb on - strand, within CCNA_02564 at 2712.915 kb on + strand, within CCNA_02564 at 2712.917 kb on + strand, within CCNA_02564 at 2712.917 kb on + strand, within CCNA_02564 at 2712.917 kb on + strand, within CCNA_02564 at 2712.925 kb on - strand, within CCNA_02564 at 2712.927 kb on + strand, within CCNA_02564 at 2712.927 kb on + strand, within CCNA_02564 at 2712.932 kb on + strand, within CCNA_02564 at 2712.935 kb on - strand, within CCNA_02564 at 2712.940 kb on - strand, within CCNA_02564 at 2712.970 kb on + strand, within CCNA_02564 at 2712.978 kb on - strand, within CCNA_02564 at 2712.994 kb on + strand, within CCNA_02564 at 2712.994 kb on + strand, within CCNA_02564 at 2713.001 kb on + strand, within CCNA_02564 at 2713.020 kb on - strand at 2713.029 kb on + strand at 2713.037 kb on - strand at 2713.052 kb on - strand at 2713.085 kb on + strand at 2713.145 kb on - strand at 2713.149 kb on + strand at 2713.152 kb on + strand at 2713.160 kb on - strand at 2713.178 kb on + strand at 2713.196 kb on + strand at 2713.251 kb on + strand at 2713.261 kb on - strand at 2713.282 kb on - strand at 2713.282 kb on - strand at 2713.282 kb on - strand at 2713.282 kb on - strand at 2713.304 kb on + strand at 2713.304 kb on + strand at 2713.304 kb on + strand at 2713.325 kb on + strand at 2713.354 kb on - strand, within CCNA_02565 at 2713.363 kb on - strand, within CCNA_02565 at 2713.363 kb on - strand, within CCNA_02565 at 2713.363 kb on - strand, within CCNA_02565 at 2713.393 kb on + strand, within CCNA_02565 at 2713.394 kb on + strand, within CCNA_02565 at 2713.399 kb on + strand, within CCNA_02565 at 2713.412 kb on - strand, within CCNA_02565 at 2713.412 kb on - strand, within CCNA_02565 at 2713.445 kb on + strand, within CCNA_02565 at 2713.450 kb on + strand, within CCNA_02565 at 2713.453 kb on - strand, within CCNA_02565 at 2713.453 kb on - strand, within CCNA_02565 at 2713.458 kb on - strand, within CCNA_02565 at 2713.515 kb on + strand, within CCNA_02565 at 2713.544 kb on - strand, within CCNA_02565 at 2713.583 kb on - strand, within CCNA_02565 at 2713.591 kb on - strand, within CCNA_02565 at 2713.614 kb on + strand, within CCNA_02565 at 2713.614 kb on + strand, within CCNA_02565 at 2713.644 kb on - strand, within CCNA_02565 at 2713.675 kb on + strand, within CCNA_02565 at 2713.698 kb on + strand, within CCNA_02565 at 2713.706 kb on - strand, within CCNA_02565 at 2713.723 kb on - strand, within CCNA_02565 at 2713.730 kb on + strand, within CCNA_02565 at 2713.741 kb on + strand, within CCNA_02565 at 2713.763 kb on + strand, within CCNA_02565 at 2713.763 kb on + strand, within CCNA_02565 at 2713.763 kb on + strand, within CCNA_02565 at 2713.763 kb on + strand, within CCNA_02565 at 2713.766 kb on + strand, within CCNA_02565 at 2713.771 kb on - strand at 2713.829 kb on + strand at 2713.832 kb on - strand at 2713.837 kb on - strand at 2713.837 kb on - strand at 2713.852 kb on - strand at 2713.894 kb on + strand at 2713.902 kb on - strand at 2713.902 kb on - strand at 2713.924 kb on + strand at 2713.931 kb on + strand at 2713.931 kb on + strand at 2713.931 kb on + strand at 2713.932 kb on - strand at 2713.939 kb on - strand at 2713.939 kb on - strand at 2713.939 kb on - strand at 2713.939 kb on - strand at 2713.987 kb on + strand at 2713.997 kb on - strand at 2714.000 kb on + strand at 2714.025 kb on - strand at 2714.029 kb on + strand at 2714.046 kb on - strand at 2714.077 kb on - strand at 2714.086 kb on + strand at 2714.086 kb on + strand at 2714.086 kb on + strand at 2714.094 kb on - strand at 2714.095 kb on + strand at 2714.177 kb on + strand, within CCNA_02566 at 2714.192 kb on - strand, within CCNA_02566 at 2714.229 kb on + strand, within CCNA_02566 at 2714.231 kb on + strand, within CCNA_02566 at 2714.256 kb on + strand, within CCNA_02566 at 2714.263 kb on + strand, within CCNA_02566 at 2714.263 kb on + strand, within CCNA_02566 at 2714.271 kb on - strand, within CCNA_02566 at 2714.282 kb on + strand, within CCNA_02566 at 2714.283 kb on - strand, within CCNA_02566 at 2714.283 kb on - strand, within CCNA_02566 at 2714.290 kb on + strand, within CCNA_02566 at 2714.290 kb on - strand, within CCNA_02566 at 2714.298 kb on - strand, within CCNA_02566 at 2714.319 kb on + strand, within CCNA_02566 at 2714.319 kb on + strand, within CCNA_02566 at 2714.327 kb on - strand, within CCNA_02566 at 2714.327 kb on - strand, within CCNA_02566 at 2714.368 kb on + strand, within CCNA_02566 at 2714.397 kb on - strand, within CCNA_02566 at 2714.443 kb on - strand, within CCNA_02566 at 2714.501 kb on + strand, within CCNA_02566 at 2714.509 kb on - strand, within CCNA_02566 at 2714.540 kb on + strand, within CCNA_02566 at 2714.572 kb on + strand, within CCNA_02566 at 2714.572 kb on + strand, within CCNA_02566 at 2714.580 kb on - strand, within CCNA_02566 at 2714.591 kb on + strand, within CCNA_02566 at 2714.591 kb on + strand, within CCNA_02566 at 2714.591 kb on + strand, within CCNA_02566 at 2714.591 kb on + strand, within CCNA_02566 at 2714.591 kb on + strand, within CCNA_02566 at 2714.599 kb on - strand, within CCNA_02566 at 2714.599 kb on - strand, within CCNA_02566 at 2714.601 kb on + strand, within CCNA_02566 at 2714.662 kb on + strand, within CCNA_02566 at 2714.714 kb on + strand, within CCNA_02566 at 2714.715 kb on - strand, within CCNA_02566 at 2714.723 kb on + strand, within CCNA_02566 at 2714.731 kb on - strand, within CCNA_02566 at 2714.740 kb on + strand, within CCNA_02566 at 2714.748 kb on - strand, within CCNA_02566 at 2714.748 kb on - strand, within CCNA_02566 at 2714.748 kb on - strand, within CCNA_02566 at 2714.766 kb on - strand, within CCNA_02566 at 2714.785 kb on + strand, within CCNA_02566 at 2714.785 kb on + strand, within CCNA_02566 at 2714.785 kb on + strand, within CCNA_02566 at 2714.785 kb on + strand, within CCNA_02566 at 2714.793 kb on - strand, within CCNA_02566
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with perchlorate 50 mM remove 2,712,289 + CCNA_02564 0.25 +0.4 2,712,325 - CCNA_02564 0.28 -0.9 2,712,376 - CCNA_02564 0.32 -0.8 2,712,400 - CCNA_02564 0.34 +0.5 2,712,439 - CCNA_02564 0.38 +0.6 2,712,458 - +2.5 2,712,477 + CCNA_02564 0.41 +0.1 2,712,501 + CCNA_02564 0.44 -0.4 2,712,556 - CCNA_02564 0.48 -0.2 2,712,557 - CCNA_02564 0.49 -0.0 2,712,566 - CCNA_02564 0.49 -0.0 2,712,587 + CCNA_02564 0.51 -1.6 2,712,587 + CCNA_02564 0.51 +0.4 2,712,598 + CCNA_02564 0.52 -0.9 2,712,603 + CCNA_02564 0.53 -0.1 2,712,693 - CCNA_02564 0.61 -0.1 2,712,711 + CCNA_02564 0.62 +0.6 2,712,754 - CCNA_02564 0.66 +0.0 2,712,774 - CCNA_02564 0.68 +1.1 2,712,815 + CCNA_02564 0.72 -1.2 2,712,830 - CCNA_02564 0.73 -0.2 2,712,839 - CCNA_02564 0.74 -0.4 2,712,846 - CCNA_02564 0.74 -0.8 2,712,849 + CCNA_02564 0.75 -0.8 2,712,849 + CCNA_02564 0.75 -0.5 2,712,857 - CCNA_02564 0.75 -2.0 2,712,889 + CCNA_02564 0.78 -1.8 2,712,897 - CCNA_02564 0.79 +0.8 2,712,897 - CCNA_02564 0.79 -0.6 2,712,915 + CCNA_02564 0.81 -1.8 2,712,917 + CCNA_02564 0.81 +0.1 2,712,917 + CCNA_02564 0.81 +0.3 2,712,917 + CCNA_02564 0.81 -0.9 2,712,925 - CCNA_02564 0.82 -1.3 2,712,927 + CCNA_02564 0.82 +0.2 2,712,927 + CCNA_02564 0.82 -1.1 2,712,932 + CCNA_02564 0.82 -1.6 2,712,935 - CCNA_02564 0.82 +0.2 2,712,940 - CCNA_02564 0.83 -0.8 2,712,970 + CCNA_02564 0.86 -0.2 2,712,978 - CCNA_02564 0.86 -1.3 2,712,994 + CCNA_02564 0.88 +0.1 2,712,994 + CCNA_02564 0.88 -0.8 2,713,001 + CCNA_02564 0.88 -1.6 2,713,020 - +0.5 2,713,029 + -0.7 2,713,037 - +0.6 2,713,052 - -1.5 2,713,085 + +1.8 2,713,145 - +2.5 2,713,149 + -1.4 2,713,152 + -1.4 2,713,160 - +0.6 2,713,178 + -2.3 2,713,196 + -0.7 2,713,251 + -1.0 2,713,261 - +1.1 2,713,282 - -0.6 2,713,282 - -0.5 2,713,282 - -1.5 2,713,282 - -0.0 2,713,304 + +0.6 2,713,304 + +1.1 2,713,304 + -0.5 2,713,325 + +0.6 2,713,354 - CCNA_02565 0.15 -0.5 2,713,363 - CCNA_02565 0.16 -0.9 2,713,363 - CCNA_02565 0.16 -1.5 2,713,363 - CCNA_02565 0.16 +0.1 2,713,393 + CCNA_02565 0.22 -0.4 2,713,394 + CCNA_02565 0.22 -0.5 2,713,399 + CCNA_02565 0.23 -0.4 2,713,412 - CCNA_02565 0.25 -0.5 2,713,412 - CCNA_02565 0.25 -0.2 2,713,445 + CCNA_02565 0.31 -1.6 2,713,450 + CCNA_02565 0.32 -0.8 2,713,453 - CCNA_02565 0.33 +0.5 2,713,453 - CCNA_02565 0.33 -0.9 2,713,458 - CCNA_02565 0.34 -0.1 2,713,515 + CCNA_02565 0.44 +0.2 2,713,544 - CCNA_02565 0.49 -2.4 2,713,583 - CCNA_02565 0.56 -0.2 2,713,591 - CCNA_02565 0.58 -0.7 2,713,614 + CCNA_02565 0.62 -0.5 2,713,614 + CCNA_02565 0.62 -0.6 2,713,644 - CCNA_02565 0.67 +0.9 2,713,675 + CCNA_02565 0.73 -1.4 2,713,698 + CCNA_02565 0.77 +1.5 2,713,706 - CCNA_02565 0.79 +0.6 2,713,723 - CCNA_02565 0.82 -0.8 2,713,730 + CCNA_02565 0.83 -0.4 2,713,741 + CCNA_02565 0.85 -0.7 2,713,763 + CCNA_02565 0.89 -0.1 2,713,763 + CCNA_02565 0.89 -1.0 2,713,763 + CCNA_02565 0.89 +0.2 2,713,763 + CCNA_02565 0.89 -1.2 2,713,766 + CCNA_02565 0.89 -1.4 2,713,771 - -0.5 2,713,829 + +0.5 2,713,832 - -1.8 2,713,837 - -0.2 2,713,837 - -1.1 2,713,852 - +1.5 2,713,894 + +1.1 2,713,902 - -0.2 2,713,902 - -0.0 2,713,924 + +0.8 2,713,931 + +1.1 2,713,931 + +1.5 2,713,931 + +0.6 2,713,932 - -0.2 2,713,939 - -1.1 2,713,939 - -1.3 2,713,939 - -0.9 2,713,939 - -1.3 2,713,987 + +0.8 2,713,997 - -0.5 2,714,000 + -0.5 2,714,025 - -1.1 2,714,029 + +0.9 2,714,046 - -0.2 2,714,077 - -1.6 2,714,086 + +0.7 2,714,086 + -0.1 2,714,086 + +1.3 2,714,094 - -0.2 2,714,095 + +0.9 2,714,177 + CCNA_02566 0.10 -0.1 2,714,192 - CCNA_02566 0.11 +2.6 2,714,229 + CCNA_02566 0.12 +1.0 2,714,231 + CCNA_02566 0.12 -1.6 2,714,256 + CCNA_02566 0.13 -1.5 2,714,263 + CCNA_02566 0.14 -0.4 2,714,263 + CCNA_02566 0.14 +0.6 2,714,271 - CCNA_02566 0.14 +1.1 2,714,282 + CCNA_02566 0.14 -0.3 2,714,283 - CCNA_02566 0.14 +0.9 2,714,283 - CCNA_02566 0.14 +0.3 2,714,290 + CCNA_02566 0.15 +0.3 2,714,290 - CCNA_02566 0.15 -0.5 2,714,298 - CCNA_02566 0.15 -0.4 2,714,319 + CCNA_02566 0.16 +0.1 2,714,319 + CCNA_02566 0.16 -1.3 2,714,327 - CCNA_02566 0.16 +2.0 2,714,327 - CCNA_02566 0.16 +0.7 2,714,368 + CCNA_02566 0.18 -0.0 2,714,397 - CCNA_02566 0.19 +0.3 2,714,443 - CCNA_02566 0.21 +0.6 2,714,501 + CCNA_02566 0.23 +0.4 2,714,509 - CCNA_02566 0.23 +0.1 2,714,540 + CCNA_02566 0.24 +1.4 2,714,572 + CCNA_02566 0.26 -0.4 2,714,572 + CCNA_02566 0.26 +1.5 2,714,580 - CCNA_02566 0.26 -0.1 2,714,591 + CCNA_02566 0.26 +2.4 2,714,591 + CCNA_02566 0.26 -1.4 2,714,591 + CCNA_02566 0.26 +0.4 2,714,591 + CCNA_02566 0.26 +0.3 2,714,591 + CCNA_02566 0.26 +1.5 2,714,599 - CCNA_02566 0.27 -0.5 2,714,599 - CCNA_02566 0.27 -0.9 2,714,601 + CCNA_02566 0.27 +2.2 2,714,662 + CCNA_02566 0.29 +0.5 2,714,714 + CCNA_02566 0.31 -0.1 2,714,715 - CCNA_02566 0.31 -0.1 2,714,723 + CCNA_02566 0.31 +1.0 2,714,731 - CCNA_02566 0.32 -1.8 2,714,740 + CCNA_02566 0.32 -0.7 2,714,748 - CCNA_02566 0.32 -0.4 2,714,748 - CCNA_02566 0.32 -1.3 2,714,748 - CCNA_02566 0.32 -1.5 2,714,766 - CCNA_02566 0.33 +1.1 2,714,785 + CCNA_02566 0.34 -0.4 2,714,785 + CCNA_02566 0.34 +0.8 2,714,785 + CCNA_02566 0.34 -0.4 2,714,785 + CCNA_02566 0.34 +0.7 2,714,793 - CCNA_02566 0.34 +0.4
Or see this region's nucleotide sequence