Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02565

Experiment: PYE with perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02564 and CCNA_02565 are separated by 141 nucleotidesCCNA_02565 and CCNA_02566 are separated by 86 nucleotides CCNA_02564: CCNA_02564 - acyl-CoA dehydrogenase, short-chain specific, at 2,712,015 to 2,713,130 _02564 CCNA_02565: CCNA_02565 - hypothetical protein, at 2,713,272 to 2,713,823 _02565 CCNA_02566: CCNA_02566 - membrane alanine aminopeptidase, at 2,713,910 to 2,716,501 _02566 Position (kb) 2713 2714Strain fitness (log2 ratio) -2 -1 0 1 2at 2712.289 kb on + strand, within CCNA_02564at 2712.325 kb on - strand, within CCNA_02564at 2712.376 kb on - strand, within CCNA_02564at 2712.400 kb on - strand, within CCNA_02564at 2712.439 kb on - strand, within CCNA_02564at 2712.458 kb on - strandat 2712.477 kb on + strand, within CCNA_02564at 2712.501 kb on + strand, within CCNA_02564at 2712.556 kb on - strand, within CCNA_02564at 2712.557 kb on - strand, within CCNA_02564at 2712.566 kb on - strand, within CCNA_02564at 2712.587 kb on + strand, within CCNA_02564at 2712.587 kb on + strand, within CCNA_02564at 2712.598 kb on + strand, within CCNA_02564at 2712.603 kb on + strand, within CCNA_02564at 2712.693 kb on - strand, within CCNA_02564at 2712.711 kb on + strand, within CCNA_02564at 2712.754 kb on - strand, within CCNA_02564at 2712.774 kb on - strand, within CCNA_02564at 2712.815 kb on + strand, within CCNA_02564at 2712.830 kb on - strand, within CCNA_02564at 2712.839 kb on - strand, within CCNA_02564at 2712.846 kb on - strand, within CCNA_02564at 2712.849 kb on + strand, within CCNA_02564at 2712.849 kb on + strand, within CCNA_02564at 2712.857 kb on - strand, within CCNA_02564at 2712.889 kb on + strand, within CCNA_02564at 2712.897 kb on - strand, within CCNA_02564at 2712.897 kb on - strand, within CCNA_02564at 2712.915 kb on + strand, within CCNA_02564at 2712.917 kb on + strand, within CCNA_02564at 2712.917 kb on + strand, within CCNA_02564at 2712.917 kb on + strand, within CCNA_02564at 2712.925 kb on - strand, within CCNA_02564at 2712.927 kb on + strand, within CCNA_02564at 2712.927 kb on + strand, within CCNA_02564at 2712.932 kb on + strand, within CCNA_02564at 2712.935 kb on - strand, within CCNA_02564at 2712.940 kb on - strand, within CCNA_02564at 2712.970 kb on + strand, within CCNA_02564at 2712.978 kb on - strand, within CCNA_02564at 2712.994 kb on + strand, within CCNA_02564at 2712.994 kb on + strand, within CCNA_02564at 2713.001 kb on + strand, within CCNA_02564at 2713.020 kb on - strandat 2713.029 kb on + strandat 2713.037 kb on - strandat 2713.052 kb on - strandat 2713.085 kb on + strandat 2713.145 kb on - strandat 2713.149 kb on + strandat 2713.152 kb on + strandat 2713.160 kb on - strandat 2713.178 kb on + strandat 2713.196 kb on + strandat 2713.251 kb on + strandat 2713.261 kb on - strandat 2713.282 kb on - strandat 2713.282 kb on - strandat 2713.282 kb on - strandat 2713.282 kb on - strandat 2713.304 kb on + strandat 2713.304 kb on + strandat 2713.304 kb on + strandat 2713.325 kb on + strandat 2713.354 kb on - strand, within CCNA_02565at 2713.363 kb on - strand, within CCNA_02565at 2713.363 kb on - strand, within CCNA_02565at 2713.363 kb on - strand, within CCNA_02565at 2713.393 kb on + strand, within CCNA_02565at 2713.394 kb on + strand, within CCNA_02565at 2713.399 kb on + strand, within CCNA_02565at 2713.412 kb on - strand, within CCNA_02565at 2713.412 kb on - strand, within CCNA_02565at 2713.445 kb on + strand, within CCNA_02565at 2713.450 kb on + strand, within CCNA_02565at 2713.453 kb on - strand, within CCNA_02565at 2713.453 kb on - strand, within CCNA_02565at 2713.458 kb on - strand, within CCNA_02565at 2713.515 kb on + strand, within CCNA_02565at 2713.544 kb on - strand, within CCNA_02565at 2713.583 kb on - strand, within CCNA_02565at 2713.591 kb on - strand, within CCNA_02565at 2713.614 kb on + strand, within CCNA_02565at 2713.614 kb on + strand, within CCNA_02565at 2713.644 kb on - strand, within CCNA_02565at 2713.675 kb on + strand, within CCNA_02565at 2713.698 kb on + strand, within CCNA_02565at 2713.706 kb on - strand, within CCNA_02565at 2713.723 kb on - strand, within CCNA_02565at 2713.730 kb on + strand, within CCNA_02565at 2713.741 kb on + strand, within CCNA_02565at 2713.763 kb on + strand, within CCNA_02565at 2713.763 kb on + strand, within CCNA_02565at 2713.763 kb on + strand, within CCNA_02565at 2713.763 kb on + strand, within CCNA_02565at 2713.766 kb on + strand, within CCNA_02565at 2713.771 kb on - strandat 2713.829 kb on + strandat 2713.832 kb on - strandat 2713.837 kb on - strandat 2713.837 kb on - strandat 2713.852 kb on - strandat 2713.894 kb on + strandat 2713.902 kb on - strandat 2713.902 kb on - strandat 2713.924 kb on + strandat 2713.931 kb on + strandat 2713.931 kb on + strandat 2713.931 kb on + strandat 2713.932 kb on - strandat 2713.939 kb on - strandat 2713.939 kb on - strandat 2713.939 kb on - strandat 2713.939 kb on - strandat 2713.987 kb on + strandat 2713.997 kb on - strandat 2714.000 kb on + strandat 2714.025 kb on - strandat 2714.029 kb on + strandat 2714.046 kb on - strandat 2714.077 kb on - strandat 2714.086 kb on + strandat 2714.086 kb on + strandat 2714.086 kb on + strandat 2714.094 kb on - strandat 2714.095 kb on + strandat 2714.177 kb on + strand, within CCNA_02566at 2714.192 kb on - strand, within CCNA_02566at 2714.229 kb on + strand, within CCNA_02566at 2714.231 kb on + strand, within CCNA_02566at 2714.256 kb on + strand, within CCNA_02566at 2714.263 kb on + strand, within CCNA_02566at 2714.263 kb on + strand, within CCNA_02566at 2714.271 kb on - strand, within CCNA_02566at 2714.282 kb on + strand, within CCNA_02566at 2714.283 kb on - strand, within CCNA_02566at 2714.283 kb on - strand, within CCNA_02566at 2714.290 kb on + strand, within CCNA_02566at 2714.290 kb on - strand, within CCNA_02566at 2714.298 kb on - strand, within CCNA_02566at 2714.319 kb on + strand, within CCNA_02566at 2714.319 kb on + strand, within CCNA_02566at 2714.327 kb on - strand, within CCNA_02566at 2714.327 kb on - strand, within CCNA_02566at 2714.368 kb on + strand, within CCNA_02566at 2714.397 kb on - strand, within CCNA_02566at 2714.443 kb on - strand, within CCNA_02566at 2714.501 kb on + strand, within CCNA_02566at 2714.509 kb on - strand, within CCNA_02566at 2714.540 kb on + strand, within CCNA_02566at 2714.572 kb on + strand, within CCNA_02566at 2714.572 kb on + strand, within CCNA_02566at 2714.580 kb on - strand, within CCNA_02566at 2714.591 kb on + strand, within CCNA_02566at 2714.591 kb on + strand, within CCNA_02566at 2714.591 kb on + strand, within CCNA_02566at 2714.591 kb on + strand, within CCNA_02566at 2714.591 kb on + strand, within CCNA_02566at 2714.599 kb on - strand, within CCNA_02566at 2714.599 kb on - strand, within CCNA_02566at 2714.601 kb on + strand, within CCNA_02566at 2714.662 kb on + strand, within CCNA_02566at 2714.714 kb on + strand, within CCNA_02566at 2714.715 kb on - strand, within CCNA_02566at 2714.723 kb on + strand, within CCNA_02566at 2714.731 kb on - strand, within CCNA_02566at 2714.740 kb on + strand, within CCNA_02566at 2714.748 kb on - strand, within CCNA_02566at 2714.748 kb on - strand, within CCNA_02566at 2714.748 kb on - strand, within CCNA_02566at 2714.766 kb on - strand, within CCNA_02566at 2714.785 kb on + strand, within CCNA_02566at 2714.785 kb on + strand, within CCNA_02566at 2714.785 kb on + strand, within CCNA_02566at 2714.785 kb on + strand, within CCNA_02566at 2714.793 kb on - strand, within CCNA_02566

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with perchlorate 50 mM
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2,712,289 + CCNA_02564 0.25 +0.4
2,712,325 - CCNA_02564 0.28 -0.9
2,712,376 - CCNA_02564 0.32 -0.8
2,712,400 - CCNA_02564 0.34 +0.5
2,712,439 - CCNA_02564 0.38 +0.6
2,712,458 - +2.5
2,712,477 + CCNA_02564 0.41 +0.1
2,712,501 + CCNA_02564 0.44 -0.4
2,712,556 - CCNA_02564 0.48 -0.2
2,712,557 - CCNA_02564 0.49 -0.0
2,712,566 - CCNA_02564 0.49 -0.0
2,712,587 + CCNA_02564 0.51 -1.6
2,712,587 + CCNA_02564 0.51 +0.4
2,712,598 + CCNA_02564 0.52 -0.9
2,712,603 + CCNA_02564 0.53 -0.1
2,712,693 - CCNA_02564 0.61 -0.1
2,712,711 + CCNA_02564 0.62 +0.6
2,712,754 - CCNA_02564 0.66 +0.0
2,712,774 - CCNA_02564 0.68 +1.1
2,712,815 + CCNA_02564 0.72 -1.2
2,712,830 - CCNA_02564 0.73 -0.2
2,712,839 - CCNA_02564 0.74 -0.4
2,712,846 - CCNA_02564 0.74 -0.8
2,712,849 + CCNA_02564 0.75 -0.8
2,712,849 + CCNA_02564 0.75 -0.5
2,712,857 - CCNA_02564 0.75 -2.0
2,712,889 + CCNA_02564 0.78 -1.8
2,712,897 - CCNA_02564 0.79 +0.8
2,712,897 - CCNA_02564 0.79 -0.6
2,712,915 + CCNA_02564 0.81 -1.8
2,712,917 + CCNA_02564 0.81 +0.1
2,712,917 + CCNA_02564 0.81 +0.3
2,712,917 + CCNA_02564 0.81 -0.9
2,712,925 - CCNA_02564 0.82 -1.3
2,712,927 + CCNA_02564 0.82 +0.2
2,712,927 + CCNA_02564 0.82 -1.1
2,712,932 + CCNA_02564 0.82 -1.6
2,712,935 - CCNA_02564 0.82 +0.2
2,712,940 - CCNA_02564 0.83 -0.8
2,712,970 + CCNA_02564 0.86 -0.2
2,712,978 - CCNA_02564 0.86 -1.3
2,712,994 + CCNA_02564 0.88 +0.1
2,712,994 + CCNA_02564 0.88 -0.8
2,713,001 + CCNA_02564 0.88 -1.6
2,713,020 - +0.5
2,713,029 + -0.7
2,713,037 - +0.6
2,713,052 - -1.5
2,713,085 + +1.8
2,713,145 - +2.5
2,713,149 + -1.4
2,713,152 + -1.4
2,713,160 - +0.6
2,713,178 + -2.3
2,713,196 + -0.7
2,713,251 + -1.0
2,713,261 - +1.1
2,713,282 - -0.6
2,713,282 - -0.5
2,713,282 - -1.5
2,713,282 - -0.0
2,713,304 + +0.6
2,713,304 + +1.1
2,713,304 + -0.5
2,713,325 + +0.6
2,713,354 - CCNA_02565 0.15 -0.5
2,713,363 - CCNA_02565 0.16 -0.9
2,713,363 - CCNA_02565 0.16 -1.5
2,713,363 - CCNA_02565 0.16 +0.1
2,713,393 + CCNA_02565 0.22 -0.4
2,713,394 + CCNA_02565 0.22 -0.5
2,713,399 + CCNA_02565 0.23 -0.4
2,713,412 - CCNA_02565 0.25 -0.5
2,713,412 - CCNA_02565 0.25 -0.2
2,713,445 + CCNA_02565 0.31 -1.6
2,713,450 + CCNA_02565 0.32 -0.8
2,713,453 - CCNA_02565 0.33 +0.5
2,713,453 - CCNA_02565 0.33 -0.9
2,713,458 - CCNA_02565 0.34 -0.1
2,713,515 + CCNA_02565 0.44 +0.2
2,713,544 - CCNA_02565 0.49 -2.4
2,713,583 - CCNA_02565 0.56 -0.2
2,713,591 - CCNA_02565 0.58 -0.7
2,713,614 + CCNA_02565 0.62 -0.5
2,713,614 + CCNA_02565 0.62 -0.6
2,713,644 - CCNA_02565 0.67 +0.9
2,713,675 + CCNA_02565 0.73 -1.4
2,713,698 + CCNA_02565 0.77 +1.5
2,713,706 - CCNA_02565 0.79 +0.6
2,713,723 - CCNA_02565 0.82 -0.8
2,713,730 + CCNA_02565 0.83 -0.4
2,713,741 + CCNA_02565 0.85 -0.7
2,713,763 + CCNA_02565 0.89 -0.1
2,713,763 + CCNA_02565 0.89 -1.0
2,713,763 + CCNA_02565 0.89 +0.2
2,713,763 + CCNA_02565 0.89 -1.2
2,713,766 + CCNA_02565 0.89 -1.4
2,713,771 - -0.5
2,713,829 + +0.5
2,713,832 - -1.8
2,713,837 - -0.2
2,713,837 - -1.1
2,713,852 - +1.5
2,713,894 + +1.1
2,713,902 - -0.2
2,713,902 - -0.0
2,713,924 + +0.8
2,713,931 + +1.1
2,713,931 + +1.5
2,713,931 + +0.6
2,713,932 - -0.2
2,713,939 - -1.1
2,713,939 - -1.3
2,713,939 - -0.9
2,713,939 - -1.3
2,713,987 + +0.8
2,713,997 - -0.5
2,714,000 + -0.5
2,714,025 - -1.1
2,714,029 + +0.9
2,714,046 - -0.2
2,714,077 - -1.6
2,714,086 + +0.7
2,714,086 + -0.1
2,714,086 + +1.3
2,714,094 - -0.2
2,714,095 + +0.9
2,714,177 + CCNA_02566 0.10 -0.1
2,714,192 - CCNA_02566 0.11 +2.6
2,714,229 + CCNA_02566 0.12 +1.0
2,714,231 + CCNA_02566 0.12 -1.6
2,714,256 + CCNA_02566 0.13 -1.5
2,714,263 + CCNA_02566 0.14 -0.4
2,714,263 + CCNA_02566 0.14 +0.6
2,714,271 - CCNA_02566 0.14 +1.1
2,714,282 + CCNA_02566 0.14 -0.3
2,714,283 - CCNA_02566 0.14 +0.9
2,714,283 - CCNA_02566 0.14 +0.3
2,714,290 + CCNA_02566 0.15 +0.3
2,714,290 - CCNA_02566 0.15 -0.5
2,714,298 - CCNA_02566 0.15 -0.4
2,714,319 + CCNA_02566 0.16 +0.1
2,714,319 + CCNA_02566 0.16 -1.3
2,714,327 - CCNA_02566 0.16 +2.0
2,714,327 - CCNA_02566 0.16 +0.7
2,714,368 + CCNA_02566 0.18 -0.0
2,714,397 - CCNA_02566 0.19 +0.3
2,714,443 - CCNA_02566 0.21 +0.6
2,714,501 + CCNA_02566 0.23 +0.4
2,714,509 - CCNA_02566 0.23 +0.1
2,714,540 + CCNA_02566 0.24 +1.4
2,714,572 + CCNA_02566 0.26 -0.4
2,714,572 + CCNA_02566 0.26 +1.5
2,714,580 - CCNA_02566 0.26 -0.1
2,714,591 + CCNA_02566 0.26 +2.4
2,714,591 + CCNA_02566 0.26 -1.4
2,714,591 + CCNA_02566 0.26 +0.4
2,714,591 + CCNA_02566 0.26 +0.3
2,714,591 + CCNA_02566 0.26 +1.5
2,714,599 - CCNA_02566 0.27 -0.5
2,714,599 - CCNA_02566 0.27 -0.9
2,714,601 + CCNA_02566 0.27 +2.2
2,714,662 + CCNA_02566 0.29 +0.5
2,714,714 + CCNA_02566 0.31 -0.1
2,714,715 - CCNA_02566 0.31 -0.1
2,714,723 + CCNA_02566 0.31 +1.0
2,714,731 - CCNA_02566 0.32 -1.8
2,714,740 + CCNA_02566 0.32 -0.7
2,714,748 - CCNA_02566 0.32 -0.4
2,714,748 - CCNA_02566 0.32 -1.3
2,714,748 - CCNA_02566 0.32 -1.5
2,714,766 - CCNA_02566 0.33 +1.1
2,714,785 + CCNA_02566 0.34 -0.4
2,714,785 + CCNA_02566 0.34 +0.8
2,714,785 + CCNA_02566 0.34 -0.4
2,714,785 + CCNA_02566 0.34 +0.7
2,714,793 - CCNA_02566 0.34 +0.4

Or see this region's nucleotide sequence