Experiment: PYE with perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01485 and CCNA_01486 are separated by 40 nucleotides CCNA_01486 and CCNA_01487 are separated by 173 nucleotides
CCNA_01485: CCNA_01485 - aldose 1-epimerase, at 1,591,536 to 1,592,672
_01485
CCNA_01486: CCNA_01486 - fumarylacetoacetate (FAA) hydrolase family protein, at 1,592,713 to 1,593,723
_01486
CCNA_01487: CCNA_01487 - GntR-family transcriptional regulator, at 1,593,897 to 1,594,643
_01487
Position (kb)
1592
1593
1594 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1591.723 kb on + strand, within CCNA_01485 at 1591.723 kb on + strand, within CCNA_01485 at 1591.731 kb on - strand, within CCNA_01485 at 1591.736 kb on - strand, within CCNA_01485 at 1591.821 kb on - strand, within CCNA_01485 at 1591.835 kb on - strand, within CCNA_01485 at 1591.835 kb on - strand, within CCNA_01485 at 1591.835 kb on - strand, within CCNA_01485 at 1591.847 kb on - strand, within CCNA_01485 at 1591.866 kb on + strand, within CCNA_01485 at 1591.868 kb on + strand, within CCNA_01485 at 1591.868 kb on + strand, within CCNA_01485 at 1591.915 kb on - strand, within CCNA_01485 at 1591.940 kb on + strand, within CCNA_01485 at 1591.945 kb on + strand, within CCNA_01485 at 1591.953 kb on - strand, within CCNA_01485 at 1591.953 kb on - strand, within CCNA_01485 at 1591.960 kb on + strand, within CCNA_01485 at 1591.970 kb on + strand, within CCNA_01485 at 1591.970 kb on + strand, within CCNA_01485 at 1591.970 kb on + strand, within CCNA_01485 at 1591.985 kb on + strand, within CCNA_01485 at 1591.993 kb on - strand, within CCNA_01485 at 1592.007 kb on + strand, within CCNA_01485 at 1592.015 kb on - strand, within CCNA_01485 at 1592.022 kb on - strand, within CCNA_01485 at 1592.061 kb on - strand, within CCNA_01485 at 1592.063 kb on + strand, within CCNA_01485 at 1592.063 kb on - strand, within CCNA_01485 at 1592.071 kb on - strand, within CCNA_01485 at 1592.078 kb on + strand, within CCNA_01485 at 1592.078 kb on + strand, within CCNA_01485 at 1592.086 kb on - strand, within CCNA_01485 at 1592.146 kb on + strand, within CCNA_01485 at 1592.176 kb on + strand, within CCNA_01485 at 1592.184 kb on - strand, within CCNA_01485 at 1592.231 kb on + strand, within CCNA_01485 at 1592.234 kb on - strand, within CCNA_01485 at 1592.236 kb on + strand, within CCNA_01485 at 1592.254 kb on + strand, within CCNA_01485 at 1592.276 kb on - strand, within CCNA_01485 at 1592.282 kb on - strand, within CCNA_01485 at 1592.284 kb on - strand, within CCNA_01485 at 1592.289 kb on + strand, within CCNA_01485 at 1592.289 kb on + strand, within CCNA_01485 at 1592.313 kb on + strand, within CCNA_01485 at 1592.313 kb on + strand, within CCNA_01485 at 1592.321 kb on - strand, within CCNA_01485 at 1592.321 kb on - strand, within CCNA_01485 at 1592.321 kb on - strand, within CCNA_01485 at 1592.321 kb on - strand, within CCNA_01485 at 1592.423 kb on - strand, within CCNA_01485 at 1592.439 kb on + strand, within CCNA_01485 at 1592.439 kb on + strand, within CCNA_01485 at 1592.447 kb on - strand, within CCNA_01485 at 1592.447 kb on - strand, within CCNA_01485 at 1592.490 kb on + strand, within CCNA_01485 at 1592.490 kb on + strand, within CCNA_01485 at 1592.490 kb on + strand, within CCNA_01485 at 1592.490 kb on + strand, within CCNA_01485 at 1592.498 kb on - strand, within CCNA_01485 at 1592.501 kb on + strand, within CCNA_01485 at 1592.509 kb on - strand, within CCNA_01485 at 1592.509 kb on - strand, within CCNA_01485 at 1592.516 kb on + strand, within CCNA_01485 at 1592.518 kb on + strand, within CCNA_01485 at 1592.536 kb on + strand, within CCNA_01485 at 1592.541 kb on + strand, within CCNA_01485 at 1592.544 kb on - strand, within CCNA_01485 at 1592.546 kb on + strand, within CCNA_01485 at 1592.553 kb on + strand, within CCNA_01485 at 1592.554 kb on - strand, within CCNA_01485 at 1592.554 kb on - strand, within CCNA_01485 at 1592.580 kb on - strand at 1592.610 kb on + strand at 1592.611 kb on + strand at 1592.628 kb on - strand at 1592.631 kb on + strand at 1592.639 kb on - strand at 1592.639 kb on - strand at 1592.639 kb on - strand at 1592.654 kb on - strand at 1592.654 kb on - strand at 1592.659 kb on - strand at 1592.710 kb on + strand at 1592.718 kb on - strand at 1592.739 kb on + strand at 1592.760 kb on - strand at 1592.764 kb on - strand at 1592.771 kb on + strand at 1592.779 kb on - strand at 1592.779 kb on - strand at 1592.779 kb on - strand at 1592.797 kb on - strand at 1592.850 kb on - strand, within CCNA_01486 at 1592.852 kb on + strand, within CCNA_01486 at 1592.855 kb on - strand, within CCNA_01486 at 1592.865 kb on + strand, within CCNA_01486 at 1592.895 kb on + strand, within CCNA_01486 at 1592.916 kb on + strand, within CCNA_01486 at 1592.916 kb on + strand, within CCNA_01486 at 1592.921 kb on + strand, within CCNA_01486 at 1592.924 kb on - strand, within CCNA_01486 at 1592.924 kb on - strand, within CCNA_01486 at 1592.924 kb on - strand, within CCNA_01486 at 1592.927 kb on + strand, within CCNA_01486 at 1592.935 kb on + strand, within CCNA_01486 at 1592.955 kb on - strand at 1592.965 kb on + strand, within CCNA_01486 at 1592.980 kb on + strand, within CCNA_01486 at 1592.988 kb on - strand, within CCNA_01486 at 1592.988 kb on - strand, within CCNA_01486 at 1593.045 kb on - strand, within CCNA_01486 at 1593.053 kb on - strand, within CCNA_01486 at 1593.080 kb on - strand, within CCNA_01486 at 1593.089 kb on - strand, within CCNA_01486 at 1593.139 kb on + strand, within CCNA_01486 at 1593.147 kb on - strand, within CCNA_01486 at 1593.147 kb on - strand, within CCNA_01486 at 1593.151 kb on + strand, within CCNA_01486 at 1593.158 kb on - strand, within CCNA_01486 at 1593.246 kb on + strand, within CCNA_01486 at 1593.251 kb on + strand, within CCNA_01486 at 1593.254 kb on - strand, within CCNA_01486 at 1593.269 kb on - strand, within CCNA_01486 at 1593.269 kb on - strand, within CCNA_01486 at 1593.331 kb on + strand, within CCNA_01486 at 1593.353 kb on + strand, within CCNA_01486 at 1593.373 kb on - strand, within CCNA_01486 at 1593.375 kb on + strand, within CCNA_01486 at 1593.385 kb on + strand, within CCNA_01486 at 1593.385 kb on + strand, within CCNA_01486 at 1593.385 kb on + strand, within CCNA_01486 at 1593.385 kb on + strand, within CCNA_01486 at 1593.391 kb on + strand, within CCNA_01486 at 1593.393 kb on - strand, within CCNA_01486 at 1593.393 kb on - strand, within CCNA_01486 at 1593.393 kb on - strand, within CCNA_01486 at 1593.393 kb on - strand, within CCNA_01486 at 1593.416 kb on - strand, within CCNA_01486 at 1593.424 kb on + strand, within CCNA_01486 at 1593.424 kb on + strand, within CCNA_01486 at 1593.430 kb on + strand, within CCNA_01486 at 1593.432 kb on - strand, within CCNA_01486 at 1593.434 kb on + strand, within CCNA_01486 at 1593.434 kb on + strand, within CCNA_01486 at 1593.434 kb on + strand, within CCNA_01486 at 1593.434 kb on + strand, within CCNA_01486 at 1593.434 kb on - strand, within CCNA_01486 at 1593.448 kb on - strand, within CCNA_01486 at 1593.450 kb on + strand, within CCNA_01486 at 1593.463 kb on - strand, within CCNA_01486 at 1593.547 kb on + strand, within CCNA_01486 at 1593.548 kb on + strand, within CCNA_01486 at 1593.554 kb on + strand, within CCNA_01486 at 1593.567 kb on - strand, within CCNA_01486 at 1593.619 kb on - strand, within CCNA_01486 at 1593.633 kb on + strand at 1593.687 kb on - strand at 1593.703 kb on - strand at 1593.728 kb on - strand at 1593.778 kb on - strand at 1593.817 kb on + strand at 1593.817 kb on + strand at 1593.825 kb on - strand at 1593.825 kb on - strand at 1593.856 kb on + strand at 1593.877 kb on - strand at 1593.884 kb on - strand at 1593.899 kb on + strand at 1593.945 kb on + strand at 1593.947 kb on + strand at 1593.953 kb on - strand at 1594.021 kb on - strand, within CCNA_01487 at 1594.054 kb on + strand, within CCNA_01487 at 1594.117 kb on + strand, within CCNA_01487 at 1594.121 kb on + strand, within CCNA_01487 at 1594.125 kb on - strand, within CCNA_01487 at 1594.137 kb on - strand, within CCNA_01487 at 1594.139 kb on + strand, within CCNA_01487 at 1594.148 kb on - strand at 1594.191 kb on + strand, within CCNA_01487 at 1594.191 kb on - strand, within CCNA_01487 at 1594.251 kb on - strand, within CCNA_01487 at 1594.253 kb on + strand, within CCNA_01487 at 1594.253 kb on + strand, within CCNA_01487 at 1594.262 kb on + strand, within CCNA_01487 at 1594.337 kb on + strand, within CCNA_01487 at 1594.419 kb on + strand, within CCNA_01487 at 1594.433 kb on + strand, within CCNA_01487 at 1594.433 kb on + strand, within CCNA_01487 at 1594.433 kb on + strand, within CCNA_01487 at 1594.433 kb on + strand, within CCNA_01487 at 1594.433 kb on + strand, within CCNA_01487 at 1594.434 kb on + strand, within CCNA_01487 at 1594.464 kb on + strand, within CCNA_01487 at 1594.467 kb on - strand, within CCNA_01487 at 1594.469 kb on + strand, within CCNA_01487 at 1594.472 kb on - strand, within CCNA_01487 at 1594.482 kb on - strand, within CCNA_01487 at 1594.504 kb on + strand, within CCNA_01487 at 1594.569 kb on + strand at 1594.603 kb on + strand at 1594.607 kb on + strand at 1594.646 kb on - strand at 1594.646 kb on - strand at 1594.666 kb on + strand at 1594.686 kb on + strand at 1594.701 kb on - strand at 1594.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with perchlorate 50 mM remove 1,591,723 + CCNA_01485 0.16 +0.1 1,591,723 + CCNA_01485 0.16 -2.3 1,591,731 - CCNA_01485 0.17 -1.5 1,591,736 - CCNA_01485 0.18 +1.3 1,591,821 - CCNA_01485 0.25 -0.3 1,591,835 - CCNA_01485 0.26 +0.4 1,591,835 - CCNA_01485 0.26 -0.7 1,591,835 - CCNA_01485 0.26 -2.2 1,591,847 - CCNA_01485 0.27 -0.5 1,591,866 + CCNA_01485 0.29 -1.2 1,591,868 + CCNA_01485 0.29 -1.5 1,591,868 + CCNA_01485 0.29 -1.1 1,591,915 - CCNA_01485 0.33 -2.2 1,591,940 + CCNA_01485 0.36 -0.1 1,591,945 + CCNA_01485 0.36 -0.3 1,591,953 - CCNA_01485 0.37 -0.9 1,591,953 - CCNA_01485 0.37 -1.4 1,591,960 + CCNA_01485 0.37 +2.4 1,591,970 + CCNA_01485 0.38 -0.4 1,591,970 + CCNA_01485 0.38 -1.2 1,591,970 + CCNA_01485 0.38 -1.8 1,591,985 + CCNA_01485 0.39 -1.4 1,591,993 - CCNA_01485 0.40 +0.2 1,592,007 + CCNA_01485 0.41 +0.4 1,592,015 - CCNA_01485 0.42 +0.8 1,592,022 - CCNA_01485 0.43 +0.1 1,592,061 - CCNA_01485 0.46 +0.8 1,592,063 + CCNA_01485 0.46 -0.9 1,592,063 - CCNA_01485 0.46 -0.8 1,592,071 - CCNA_01485 0.47 -1.7 1,592,078 + CCNA_01485 0.48 -0.4 1,592,078 + CCNA_01485 0.48 -0.7 1,592,086 - CCNA_01485 0.48 -1.8 1,592,146 + CCNA_01485 0.54 -0.7 1,592,176 + CCNA_01485 0.56 +2.0 1,592,184 - CCNA_01485 0.57 +0.3 1,592,231 + CCNA_01485 0.61 -0.5 1,592,234 - CCNA_01485 0.61 +0.4 1,592,236 + CCNA_01485 0.62 +0.6 1,592,254 + CCNA_01485 0.63 -1.2 1,592,276 - CCNA_01485 0.65 +0.2 1,592,282 - CCNA_01485 0.66 +1.0 1,592,284 - CCNA_01485 0.66 -0.6 1,592,289 + CCNA_01485 0.66 +0.9 1,592,289 + CCNA_01485 0.66 +1.6 1,592,313 + CCNA_01485 0.68 +0.7 1,592,313 + CCNA_01485 0.68 +1.7 1,592,321 - CCNA_01485 0.69 -0.0 1,592,321 - CCNA_01485 0.69 +0.2 1,592,321 - CCNA_01485 0.69 -0.2 1,592,321 - CCNA_01485 0.69 -0.2 1,592,423 - CCNA_01485 0.78 -0.7 1,592,439 + CCNA_01485 0.79 -0.5 1,592,439 + CCNA_01485 0.79 -0.4 1,592,447 - CCNA_01485 0.80 -0.8 1,592,447 - CCNA_01485 0.80 +0.4 1,592,490 + CCNA_01485 0.84 -0.8 1,592,490 + CCNA_01485 0.84 -2.1 1,592,490 + CCNA_01485 0.84 -0.2 1,592,490 + CCNA_01485 0.84 -2.6 1,592,498 - CCNA_01485 0.85 -0.8 1,592,501 + CCNA_01485 0.85 -0.5 1,592,509 - CCNA_01485 0.86 +0.8 1,592,509 - CCNA_01485 0.86 +0.4 1,592,516 + CCNA_01485 0.86 +1.6 1,592,518 + CCNA_01485 0.86 -0.8 1,592,536 + CCNA_01485 0.88 -0.3 1,592,541 + CCNA_01485 0.88 +1.1 1,592,544 - CCNA_01485 0.89 -1.2 1,592,546 + CCNA_01485 0.89 -1.7 1,592,553 + CCNA_01485 0.89 -1.2 1,592,554 - CCNA_01485 0.90 +2.7 1,592,554 - CCNA_01485 0.90 +1.1 1,592,580 - -2.7 1,592,610 + +2.2 1,592,611 + -1.0 1,592,628 - -1.9 1,592,631 + -1.1 1,592,639 - -1.2 1,592,639 - -0.8 1,592,639 - +0.4 1,592,654 - -1.2 1,592,654 - +0.1 1,592,659 - +1.0 1,592,710 + -0.8 1,592,718 - -0.3 1,592,739 + +1.3 1,592,760 - +1.8 1,592,764 - +0.4 1,592,771 + -1.1 1,592,779 - -0.9 1,592,779 - +0.4 1,592,779 - +4.0 1,592,797 - -0.9 1,592,850 - CCNA_01486 0.14 -0.7 1,592,852 + CCNA_01486 0.14 -1.2 1,592,855 - CCNA_01486 0.14 -0.2 1,592,865 + CCNA_01486 0.15 -1.1 1,592,895 + CCNA_01486 0.18 -0.3 1,592,916 + CCNA_01486 0.20 -1.0 1,592,916 + CCNA_01486 0.20 +1.5 1,592,921 + CCNA_01486 0.21 -0.7 1,592,924 - CCNA_01486 0.21 +0.0 1,592,924 - CCNA_01486 0.21 +0.6 1,592,924 - CCNA_01486 0.21 -0.8 1,592,927 + CCNA_01486 0.21 -0.6 1,592,935 + CCNA_01486 0.22 -1.2 1,592,955 - +1.4 1,592,965 + CCNA_01486 0.25 -0.5 1,592,980 + CCNA_01486 0.26 -1.3 1,592,988 - CCNA_01486 0.27 +0.7 1,592,988 - CCNA_01486 0.27 -1.0 1,593,045 - CCNA_01486 0.33 +2.4 1,593,053 - CCNA_01486 0.34 -0.8 1,593,080 - CCNA_01486 0.36 -2.4 1,593,089 - CCNA_01486 0.37 -1.4 1,593,139 + CCNA_01486 0.42 -1.3 1,593,147 - CCNA_01486 0.43 +0.6 1,593,147 - CCNA_01486 0.43 +0.1 1,593,151 + CCNA_01486 0.43 -0.5 1,593,158 - CCNA_01486 0.44 -0.1 1,593,246 + CCNA_01486 0.53 -0.5 1,593,251 + CCNA_01486 0.53 -0.4 1,593,254 - CCNA_01486 0.54 -1.9 1,593,269 - CCNA_01486 0.55 +0.8 1,593,269 - CCNA_01486 0.55 +0.4 1,593,331 + CCNA_01486 0.61 -0.1 1,593,353 + CCNA_01486 0.63 -0.8 1,593,373 - CCNA_01486 0.65 -1.1 1,593,375 + CCNA_01486 0.65 -1.0 1,593,385 + CCNA_01486 0.66 -1.7 1,593,385 + CCNA_01486 0.66 -0.9 1,593,385 + CCNA_01486 0.66 +0.6 1,593,385 + CCNA_01486 0.66 +0.8 1,593,391 + CCNA_01486 0.67 -1.2 1,593,393 - CCNA_01486 0.67 -0.0 1,593,393 - CCNA_01486 0.67 -1.8 1,593,393 - CCNA_01486 0.67 +0.1 1,593,393 - CCNA_01486 0.67 -0.1 1,593,416 - CCNA_01486 0.70 +0.5 1,593,424 + CCNA_01486 0.70 -1.3 1,593,424 + CCNA_01486 0.70 -0.6 1,593,430 + CCNA_01486 0.71 +1.3 1,593,432 - CCNA_01486 0.71 -1.3 1,593,434 + CCNA_01486 0.71 -2.6 1,593,434 + CCNA_01486 0.71 -1.2 1,593,434 + CCNA_01486 0.71 -0.3 1,593,434 + CCNA_01486 0.71 -1.5 1,593,434 - CCNA_01486 0.71 -1.1 1,593,448 - CCNA_01486 0.73 +0.4 1,593,450 + CCNA_01486 0.73 -0.0 1,593,463 - CCNA_01486 0.74 -2.8 1,593,547 + CCNA_01486 0.82 -0.4 1,593,548 + CCNA_01486 0.83 -1.8 1,593,554 + CCNA_01486 0.83 -0.9 1,593,567 - CCNA_01486 0.84 -1.3 1,593,619 - CCNA_01486 0.90 -0.6 1,593,633 + +0.8 1,593,687 - +0.4 1,593,703 - -0.9 1,593,728 - -1.6 1,593,778 - +2.3 1,593,817 + -2.4 1,593,817 + -1.5 1,593,825 - -1.1 1,593,825 - +1.0 1,593,856 + +0.8 1,593,877 - +0.1 1,593,884 - -0.8 1,593,899 + +1.1 1,593,945 + +0.2 1,593,947 + -0.7 1,593,953 - -1.2 1,594,021 - CCNA_01487 0.17 -1.1 1,594,054 + CCNA_01487 0.21 -0.9 1,594,117 + CCNA_01487 0.29 -0.4 1,594,121 + CCNA_01487 0.30 +2.2 1,594,125 - CCNA_01487 0.31 -1.1 1,594,137 - CCNA_01487 0.32 -2.2 1,594,139 + CCNA_01487 0.32 -0.4 1,594,148 - +1.8 1,594,191 + CCNA_01487 0.39 -0.3 1,594,191 - CCNA_01487 0.39 -0.3 1,594,251 - CCNA_01487 0.47 +1.8 1,594,253 + CCNA_01487 0.48 +0.3 1,594,253 + CCNA_01487 0.48 -1.2 1,594,262 + CCNA_01487 0.49 -1.5 1,594,337 + CCNA_01487 0.59 -0.4 1,594,419 + CCNA_01487 0.70 -0.1 1,594,433 + CCNA_01487 0.72 -1.3 1,594,433 + CCNA_01487 0.72 -1.0 1,594,433 + CCNA_01487 0.72 -1.7 1,594,433 + CCNA_01487 0.72 -0.8 1,594,433 + CCNA_01487 0.72 -0.8 1,594,434 + CCNA_01487 0.72 +0.7 1,594,464 + CCNA_01487 0.76 -1.6 1,594,467 - CCNA_01487 0.76 -0.3 1,594,469 + CCNA_01487 0.77 -1.0 1,594,472 - CCNA_01487 0.77 +0.5 1,594,482 - CCNA_01487 0.78 +0.8 1,594,504 + CCNA_01487 0.81 +0.1 1,594,569 + -1.4 1,594,603 + +0.8 1,594,607 + -0.7 1,594,646 - -1.0 1,594,646 - -0.4 1,594,666 + +0.0 1,594,686 + -0.0 1,594,701 - -1.1 1,594,701 - +0.2
Or see this region's nucleotide sequence