Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS22185 and ABZR86_RS22190 are separated by 865 nucleotides ABZR86_RS22190 and ABZR86_RS22195 are separated by 151 nucleotides ABZR86_RS22195 and ABZR86_RS22200 are separated by 31 nucleotides
ABZR86_RS22185: ABZR86_RS22185 - NUDIX hydrolase, at 399,087 to 399,653
_RS22185
ABZR86_RS22190: ABZR86_RS22190 - hypothetical protein, at 400,519 to 400,878
_RS22190
ABZR86_RS22195: ABZR86_RS22195 - STAS domain-containing protein, at 401,030 to 401,332
_RS22195
ABZR86_RS22200: ABZR86_RS22200 - methyl-accepting chemotaxis protein, at 401,364 to 402,545
_RS22200
Position (kb) 400
401 Strain fitness (log2 ratio) -1
0
1 at 399.656 kb on + strand at 399.656 kb on + strand at 399.656 kb on + strand at 399.657 kb on - strand at 399.688 kb on - strand at 399.688 kb on - strand at 400.444 kb on - strand at 400.471 kb on + strand at 400.472 kb on - strand at 400.472 kb on - strand at 400.487 kb on - strand at 400.823 kb on - strand, within ABZR86_RS22190 at 400.843 kb on + strand at 400.843 kb on + strand at 400.843 kb on + strand at 401.023 kb on + strand at 401.205 kb on + strand, within ABZR86_RS22195 at 401.205 kb on + strand, within ABZR86_RS22195 at 401.205 kb on + strand, within ABZR86_RS22195 at 401.205 kb on + strand, within ABZR86_RS22195 at 401.205 kb on + strand, within ABZR86_RS22195 at 401.205 kb on + strand, within ABZR86_RS22195 at 401.206 kb on - strand, within ABZR86_RS22195 at 401.206 kb on - strand, within ABZR86_RS22195 at 401.206 kb on - strand, within ABZR86_RS22195 at 401.206 kb on - strand, within ABZR86_RS22195
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 399,656 + -1.4 399,656 + -0.2 399,656 + +0.7 399,657 - +0.5 399,688 - +0.0 399,688 - +0.9 400,444 - +0.3 400,471 + +0.3 400,472 - +0.5 400,472 - +0.4 400,487 - +0.6 400,823 - ABZR86_RS22190 0.84 -0.8 400,843 + +0.8 400,843 + -0.4 400,843 + -0.2 401,023 + +0.8 401,205 + ABZR86_RS22195 0.58 -0.6 401,205 + ABZR86_RS22195 0.58 +0.2 401,205 + ABZR86_RS22195 0.58 -0.2 401,205 + ABZR86_RS22195 0.58 +0.6 401,205 + ABZR86_RS22195 0.58 -0.3 401,205 + ABZR86_RS22195 0.58 +0.2 401,206 - ABZR86_RS22195 0.58 -0.2 401,206 - ABZR86_RS22195 0.58 -0.9 401,206 - ABZR86_RS22195 0.58 +0.1 401,206 - ABZR86_RS22195 0.58 +0.4
Or see this region's nucleotide sequence