Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21130 and ABZR86_RS21135 are separated by 176 nucleotides ABZR86_RS21135 and ABZR86_RS21140 are separated by 79 nucleotides
ABZR86_RS21130: ABZR86_RS21130 - PadR family transcriptional regulator, at 194,375 to 195,091
_RS21130
ABZR86_RS21135: ABZR86_RS21135 - siderophore-interacting protein, at 195,268 to 196,059
_RS21135
ABZR86_RS21140: ABZR86_RS21140 - DMT family transporter, at 196,139 to 197,062
_RS21140
ABZR86_RS21145: ABZR86_RS21145 - LysR family transcriptional regulator, at 197,052 to 197,957
_RS21145
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 194.309 kb on + strand at 194.309 kb on + strand at 194.309 kb on + strand at 194.310 kb on - strand at 194.354 kb on + strand at 194.360 kb on - strand at 194.414 kb on + strand at 194.435 kb on + strand at 194.435 kb on + strand at 194.435 kb on + strand at 194.435 kb on + strand at 194.435 kb on + strand at 194.435 kb on + strand at 194.436 kb on - strand at 194.519 kb on + strand, within ABZR86_RS21130 at 194.762 kb on + strand, within ABZR86_RS21130 at 194.762 kb on + strand, within ABZR86_RS21130 at 194.835 kb on - strand, within ABZR86_RS21130 at 195.101 kb on - strand at 195.354 kb on + strand, within ABZR86_RS21135 at 195.354 kb on + strand, within ABZR86_RS21135 at 195.354 kb on + strand, within ABZR86_RS21135 at 195.526 kb on + strand, within ABZR86_RS21135 at 195.579 kb on - strand, within ABZR86_RS21135 at 195.691 kb on + strand, within ABZR86_RS21135 at 195.691 kb on + strand, within ABZR86_RS21135 at 195.691 kb on + strand, within ABZR86_RS21135 at 195.692 kb on - strand, within ABZR86_RS21135 at 195.692 kb on - strand, within ABZR86_RS21135 at 195.692 kb on - strand, within ABZR86_RS21135 at 195.692 kb on - strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.695 kb on + strand, within ABZR86_RS21135 at 195.696 kb on - strand, within ABZR86_RS21135 at 195.696 kb on - strand, within ABZR86_RS21135 at 195.928 kb on + strand, within ABZR86_RS21135 at 196.021 kb on + strand at 196.057 kb on + strand at 196.058 kb on - strand at 196.102 kb on + strand at 196.102 kb on + strand at 196.102 kb on + strand at 196.102 kb on + strand at 196.103 kb on - strand at 196.103 kb on - strand at 196.340 kb on + strand, within ABZR86_RS21140 at 196.341 kb on - strand, within ABZR86_RS21140 at 196.385 kb on + strand, within ABZR86_RS21140 at 196.385 kb on + strand, within ABZR86_RS21140 at 196.385 kb on + strand, within ABZR86_RS21140 at 196.386 kb on - strand, within ABZR86_RS21140 at 196.880 kb on + strand, within ABZR86_RS21140 at 196.881 kb on - strand, within ABZR86_RS21140 at 196.940 kb on + strand, within ABZR86_RS21140 at 196.941 kb on - strand, within ABZR86_RS21140 at 196.941 kb on - strand, within ABZR86_RS21140
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 194,309 + -0.5 194,309 + -2.2 194,309 + +0.4 194,310 - -0.4 194,354 + +0.1 194,360 - +1.2 194,414 + +2.1 194,435 + +2.7 194,435 + +1.4 194,435 + +0.2 194,435 + +0.2 194,435 + +1.3 194,435 + +1.9 194,436 - +8.9 194,519 + ABZR86_RS21130 0.20 +1.5 194,762 + ABZR86_RS21130 0.54 +8.7 194,762 + ABZR86_RS21130 0.54 +8.5 194,835 - ABZR86_RS21130 0.64 +8.8 195,101 - -0.0 195,354 + ABZR86_RS21135 0.11 +1.7 195,354 + ABZR86_RS21135 0.11 +0.1 195,354 + ABZR86_RS21135 0.11 -0.2 195,526 + ABZR86_RS21135 0.33 +0.2 195,579 - ABZR86_RS21135 0.39 +0.4 195,691 + ABZR86_RS21135 0.53 -1.0 195,691 + ABZR86_RS21135 0.53 +0.0 195,691 + ABZR86_RS21135 0.53 -0.4 195,692 - ABZR86_RS21135 0.54 +0.2 195,692 - ABZR86_RS21135 0.54 +0.3 195,692 - ABZR86_RS21135 0.54 +0.6 195,692 - ABZR86_RS21135 0.54 -1.0 195,695 + ABZR86_RS21135 0.54 +0.1 195,695 + ABZR86_RS21135 0.54 +1.0 195,695 + ABZR86_RS21135 0.54 -0.9 195,695 + ABZR86_RS21135 0.54 +0.3 195,695 + ABZR86_RS21135 0.54 +0.4 195,695 + ABZR86_RS21135 0.54 +0.4 195,695 + ABZR86_RS21135 0.54 +0.7 195,695 + ABZR86_RS21135 0.54 -0.3 195,696 - ABZR86_RS21135 0.54 -0.6 195,696 - ABZR86_RS21135 0.54 +0.1 195,928 + ABZR86_RS21135 0.83 +0.3 196,021 + -0.9 196,057 + +0.9 196,058 - +0.6 196,102 + +0.6 196,102 + -0.3 196,102 + +0.4 196,102 + -0.3 196,103 - -0.9 196,103 - -0.8 196,340 + ABZR86_RS21140 0.22 +0.6 196,341 - ABZR86_RS21140 0.22 -0.1 196,385 + ABZR86_RS21140 0.27 -0.9 196,385 + ABZR86_RS21140 0.27 +0.4 196,385 + ABZR86_RS21140 0.27 +0.7 196,386 - ABZR86_RS21140 0.27 -0.1 196,880 + ABZR86_RS21140 0.80 +0.6 196,881 - ABZR86_RS21140 0.80 +0.3 196,940 + ABZR86_RS21140 0.87 -1.2 196,941 - ABZR86_RS21140 0.87 +0.5 196,941 - ABZR86_RS21140 0.87 -0.4
Or see this region's nucleotide sequence