Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20815 and ABZR86_RS20820 are separated by 318 nucleotides ABZR86_RS20820 and ABZR86_RS20825 are separated by 199 nucleotides
ABZR86_RS20815: ABZR86_RS20815 - hypothetical protein, at 128,887 to 130,740
_RS20815
ABZR86_RS20820: ABZR86_RS20820 - CsbD family protein, at 131,059 to 131,244
_RS20820
ABZR86_RS20825: ABZR86_RS20825 - DNA topoisomerase IB, at 131,444 to 132,502
_RS20825
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1 at 130.176 kb on - strand, within ABZR86_RS20815 at 130.176 kb on - strand, within ABZR86_RS20815 at 130.178 kb on + strand, within ABZR86_RS20815 at 130.178 kb on + strand, within ABZR86_RS20815 at 130.241 kb on + strand, within ABZR86_RS20815 at 130.247 kb on + strand, within ABZR86_RS20815 at 130.247 kb on + strand, within ABZR86_RS20815 at 130.247 kb on + strand, within ABZR86_RS20815 at 130.248 kb on - strand, within ABZR86_RS20815 at 130.248 kb on - strand, within ABZR86_RS20815 at 130.248 kb on - strand, within ABZR86_RS20815 at 130.298 kb on + strand, within ABZR86_RS20815 at 130.298 kb on + strand, within ABZR86_RS20815 at 130.605 kb on - strand at 130.740 kb on + strand at 130.829 kb on + strand at 130.830 kb on - strand at 130.835 kb on + strand at 130.835 kb on + strand at 130.835 kb on + strand at 130.835 kb on + strand at 130.836 kb on - strand at 130.836 kb on - strand at 130.836 kb on - strand at 130.837 kb on + strand at 130.837 kb on + strand at 130.837 kb on + strand at 130.837 kb on + strand at 130.838 kb on - strand at 130.845 kb on - strand at 130.845 kb on - strand at 130.893 kb on + strand at 130.894 kb on - strand at 130.894 kb on - strand at 131.183 kb on - strand, within ABZR86_RS20820 at 131.283 kb on + strand at 131.283 kb on + strand at 131.284 kb on - strand at 131.285 kb on + strand at 131.285 kb on + strand at 131.286 kb on - strand at 131.289 kb on + strand at 131.302 kb on + strand at 131.302 kb on + strand at 131.303 kb on - strand at 131.304 kb on + strand at 131.304 kb on + strand at 131.522 kb on + strand at 131.523 kb on - strand at 131.579 kb on + strand, within ABZR86_RS20825 at 131.667 kb on + strand, within ABZR86_RS20825 at 131.667 kb on + strand, within ABZR86_RS20825 at 131.667 kb on + strand, within ABZR86_RS20825 at 131.668 kb on - strand, within ABZR86_RS20825 at 131.763 kb on + strand, within ABZR86_RS20825 at 131.789 kb on - strand, within ABZR86_RS20825 at 131.789 kb on - strand, within ABZR86_RS20825 at 131.869 kb on + strand, within ABZR86_RS20825 at 131.934 kb on - strand, within ABZR86_RS20825 at 132.062 kb on - strand, within ABZR86_RS20825 at 132.122 kb on + strand, within ABZR86_RS20825 at 132.177 kb on - strand, within ABZR86_RS20825 at 132.177 kb on - strand, within ABZR86_RS20825
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 130,176 - ABZR86_RS20815 0.70 +0.0 130,176 - ABZR86_RS20815 0.70 -0.4 130,178 + ABZR86_RS20815 0.70 +0.3 130,178 + ABZR86_RS20815 0.70 +0.8 130,241 + ABZR86_RS20815 0.73 +0.5 130,247 + ABZR86_RS20815 0.73 +0.4 130,247 + ABZR86_RS20815 0.73 -0.4 130,247 + ABZR86_RS20815 0.73 -0.1 130,248 - ABZR86_RS20815 0.73 +0.4 130,248 - ABZR86_RS20815 0.73 -1.2 130,248 - ABZR86_RS20815 0.73 +0.4 130,298 + ABZR86_RS20815 0.76 +0.4 130,298 + ABZR86_RS20815 0.76 -0.2 130,605 - -1.5 130,740 + +0.8 130,829 + +0.4 130,830 - -0.6 130,835 + -0.5 130,835 + -1.2 130,835 + -0.3 130,835 + -0.1 130,836 - -0.1 130,836 - -0.8 130,836 - +0.8 130,837 + +0.7 130,837 + +0.1 130,837 + +0.5 130,837 + -1.9 130,838 - +0.3 130,845 - +0.8 130,845 - -1.0 130,893 + -0.2 130,894 - -0.7 130,894 - -0.3 131,183 - ABZR86_RS20820 0.67 -1.2 131,283 + -0.2 131,283 + +1.3 131,284 - +0.2 131,285 + +0.5 131,285 + +0.3 131,286 - -0.3 131,289 + -1.2 131,302 + -0.7 131,302 + -0.4 131,303 - +0.6 131,304 + -0.0 131,304 + -0.8 131,522 + +0.1 131,523 - -0.2 131,579 + ABZR86_RS20825 0.13 +0.1 131,667 + ABZR86_RS20825 0.21 -0.3 131,667 + ABZR86_RS20825 0.21 -0.9 131,667 + ABZR86_RS20825 0.21 +0.1 131,668 - ABZR86_RS20825 0.21 +0.9 131,763 + ABZR86_RS20825 0.30 +1.6 131,789 - ABZR86_RS20825 0.33 -0.2 131,789 - ABZR86_RS20825 0.33 +0.7 131,869 + ABZR86_RS20825 0.40 -1.1 131,934 - ABZR86_RS20825 0.46 +0.1 132,062 - ABZR86_RS20825 0.58 +0.8 132,122 + ABZR86_RS20825 0.64 +0.2 132,177 - ABZR86_RS20825 0.69 -0.3 132,177 - ABZR86_RS20825 0.69 -0.2
Or see this region's nucleotide sequence