Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20525 and ABZR86_RS20530 are separated by 186 nucleotides ABZR86_RS20530 and ABZR86_RS20535 are separated by 87 nucleotides ABZR86_RS20535 and ABZR86_RS20540 are separated by 43 nucleotides
ABZR86_RS20525: ABZR86_RS20525 - Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein, at 51,282 to 52,385
_RS20525
ABZR86_RS20530: ABZR86_RS20530 - YccS family putative transporter, at 52,572 to 54,725
_RS20530
ABZR86_RS20535: ABZR86_RS20535 - membrane protein, at 54,813 to 55,361
_RS20535
ABZR86_RS20540: ABZR86_RS20540 - 3-oxoacyl-ACP reductase FabG, at 55,405 to 56,133
_RS20540
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.607 kb on - strand, within ABZR86_RS20525 at 51.651 kb on + strand, within ABZR86_RS20525 at 51.652 kb on - strand, within ABZR86_RS20525 at 51.798 kb on + strand, within ABZR86_RS20525 at 51.799 kb on - strand, within ABZR86_RS20525 at 51.804 kb on + strand, within ABZR86_RS20525 at 51.805 kb on - strand, within ABZR86_RS20525 at 51.805 kb on - strand, within ABZR86_RS20525 at 51.957 kb on + strand, within ABZR86_RS20525 at 51.957 kb on + strand, within ABZR86_RS20525 at 51.958 kb on - strand, within ABZR86_RS20525 at 51.958 kb on - strand, within ABZR86_RS20525 at 51.978 kb on + strand, within ABZR86_RS20525 at 51.979 kb on - strand, within ABZR86_RS20525 at 52.117 kb on - strand, within ABZR86_RS20525 at 52.117 kb on - strand, within ABZR86_RS20525 at 52.129 kb on - strand, within ABZR86_RS20525 at 52.180 kb on - strand, within ABZR86_RS20525 at 52.272 kb on + strand, within ABZR86_RS20525 at 52.272 kb on + strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.274 kb on + strand, within ABZR86_RS20525 at 52.275 kb on - strand at 52.403 kb on + strand at 52.404 kb on - strand at 52.559 kb on + strand at 52.559 kb on + strand at 52.559 kb on + strand at 52.559 kb on + strand at 52.560 kb on - strand at 52.560 kb on - strand at 52.560 kb on - strand at 52.602 kb on - strand at 52.680 kb on + strand at 52.680 kb on + strand at 52.680 kb on + strand at 52.681 kb on - strand at 52.681 kb on - strand at 52.681 kb on - strand at 52.810 kb on - strand, within ABZR86_RS20530 at 52.963 kb on - strand, within ABZR86_RS20530 at 52.963 kb on - strand, within ABZR86_RS20530 at 53.328 kb on + strand, within ABZR86_RS20530 at 53.328 kb on + strand, within ABZR86_RS20530 at 53.328 kb on + strand, within ABZR86_RS20530 at 53.329 kb on - strand, within ABZR86_RS20530 at 53.373 kb on + strand, within ABZR86_RS20530 at 53.624 kb on + strand, within ABZR86_RS20530 at 53.624 kb on + strand, within ABZR86_RS20530 at 53.624 kb on + strand, within ABZR86_RS20530 at 53.625 kb on - strand, within ABZR86_RS20530 at 53.818 kb on - strand, within ABZR86_RS20530 at 53.896 kb on - strand, within ABZR86_RS20530 at 54.055 kb on - strand, within ABZR86_RS20530 at 54.055 kb on - strand, within ABZR86_RS20530 at 54.619 kb on - strand at 54.858 kb on + strand at 54.858 kb on + strand at 54.859 kb on - strand at 54.859 kb on - strand at 54.859 kb on - strand at 55.000 kb on - strand, within ABZR86_RS20535 at 55.036 kb on + strand, within ABZR86_RS20535 at 55.037 kb on - strand, within ABZR86_RS20535 at 55.037 kb on - strand, within ABZR86_RS20535 at 55.102 kb on - strand, within ABZR86_RS20535 at 55.171 kb on - strand, within ABZR86_RS20535 at 55.171 kb on - strand, within ABZR86_RS20535 at 55.171 kb on - strand, within ABZR86_RS20535 at 55.173 kb on - strand, within ABZR86_RS20535 at 55.272 kb on + strand, within ABZR86_RS20535 at 55.273 kb on - strand, within ABZR86_RS20535 at 55.290 kb on + strand, within ABZR86_RS20535 at 55.291 kb on - strand, within ABZR86_RS20535 at 55.483 kb on + strand, within ABZR86_RS20540 at 55.484 kb on - strand, within ABZR86_RS20540
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 51,607 - ABZR86_RS20525 0.29 +1.0 51,651 + ABZR86_RS20525 0.33 -0.2 51,652 - ABZR86_RS20525 0.34 -0.8 51,798 + ABZR86_RS20525 0.47 +0.2 51,799 - ABZR86_RS20525 0.47 -0.8 51,804 + ABZR86_RS20525 0.47 -1.5 51,805 - ABZR86_RS20525 0.47 -0.4 51,805 - ABZR86_RS20525 0.47 -0.7 51,957 + ABZR86_RS20525 0.61 +0.2 51,957 + ABZR86_RS20525 0.61 +0.2 51,958 - ABZR86_RS20525 0.61 +0.4 51,958 - ABZR86_RS20525 0.61 +0.1 51,978 + ABZR86_RS20525 0.63 -0.3 51,979 - ABZR86_RS20525 0.63 +0.4 52,117 - ABZR86_RS20525 0.76 -0.0 52,117 - ABZR86_RS20525 0.76 -0.4 52,129 - ABZR86_RS20525 0.77 +0.3 52,180 - ABZR86_RS20525 0.81 +1.5 52,272 + ABZR86_RS20525 0.90 -2.1 52,272 + ABZR86_RS20525 0.90 -0.5 52,273 - ABZR86_RS20525 0.90 +1.0 52,273 - ABZR86_RS20525 0.90 -1.0 52,273 - ABZR86_RS20525 0.90 -0.6 52,273 - ABZR86_RS20525 0.90 -0.8 52,274 + ABZR86_RS20525 0.90 +0.0 52,275 - -1.5 52,403 + -0.6 52,404 - -1.3 52,559 + -0.9 52,559 + -0.6 52,559 + +0.3 52,559 + +0.6 52,560 - -0.5 52,560 - +0.7 52,560 - -1.4 52,602 - -0.2 52,680 + +0.3 52,680 + -0.3 52,680 + -0.9 52,681 - +0.0 52,681 - -0.5 52,681 - +0.1 52,810 - ABZR86_RS20530 0.11 -0.1 52,963 - ABZR86_RS20530 0.18 +0.0 52,963 - ABZR86_RS20530 0.18 -0.9 53,328 + ABZR86_RS20530 0.35 +0.2 53,328 + ABZR86_RS20530 0.35 +0.8 53,328 + ABZR86_RS20530 0.35 -1.5 53,329 - ABZR86_RS20530 0.35 -0.9 53,373 + ABZR86_RS20530 0.37 -0.1 53,624 + ABZR86_RS20530 0.49 -0.7 53,624 + ABZR86_RS20530 0.49 -1.9 53,624 + ABZR86_RS20530 0.49 +0.1 53,625 - ABZR86_RS20530 0.49 +1.0 53,818 - ABZR86_RS20530 0.58 -0.7 53,896 - ABZR86_RS20530 0.61 +0.7 54,055 - ABZR86_RS20530 0.69 -0.8 54,055 - ABZR86_RS20530 0.69 -0.6 54,619 - -0.4 54,858 + -0.7 54,858 + +0.8 54,859 - -0.2 54,859 - +0.1 54,859 - -1.0 55,000 - ABZR86_RS20535 0.34 -0.8 55,036 + ABZR86_RS20535 0.41 +0.4 55,037 - ABZR86_RS20535 0.41 -0.4 55,037 - ABZR86_RS20535 0.41 -0.4 55,102 - ABZR86_RS20535 0.53 +0.4 55,171 - ABZR86_RS20535 0.65 -0.3 55,171 - ABZR86_RS20535 0.65 -0.7 55,171 - ABZR86_RS20535 0.65 +1.3 55,173 - ABZR86_RS20535 0.66 -0.1 55,272 + ABZR86_RS20535 0.84 +1.8 55,273 - ABZR86_RS20535 0.84 +1.3 55,290 + ABZR86_RS20535 0.87 +0.4 55,291 - ABZR86_RS20535 0.87 -1.2 55,483 + ABZR86_RS20540 0.11 -1.1 55,484 - ABZR86_RS20540 0.11 +2.0
Or see this region's nucleotide sequence