Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19780 and ABZR86_RS19785 are separated by 150 nucleotides ABZR86_RS19785 and ABZR86_RS19790 are separated by 102 nucleotides ABZR86_RS19790 and ABZR86_RS19795 overlap by 8 nucleotides ABZR86_RS19795 and ABZR86_RS19800 are separated by 37 nucleotides
ABZR86_RS19780: ABZR86_RS19780 - LysR family transcriptional regulator, at 453,853 to 454,734
_RS19780
ABZR86_RS19785: ABZR86_RS19785 - phosphoenolpyruvate--protein phosphotransferase, at 454,885 to 456,615
_RS19785
ABZR86_RS19790: ABZR86_RS19790 - HPr family phosphocarrier protein, at 456,718 to 456,987
_RS19790
ABZR86_RS19795: ABZR86_RS19795 - PTS sugar transporter subunit IIA, at 456,980 to 457,372
_RS19795
ABZR86_RS19800: ABZR86_RS19800 - RNase adapter RapZ, at 457,410 to 458,312
_RS19800
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 454.084 kb on + strand, within ABZR86_RS19780 at 454.139 kb on + strand, within ABZR86_RS19780 at 454.139 kb on + strand, within ABZR86_RS19780 at 454.139 kb on + strand, within ABZR86_RS19780 at 454.139 kb on + strand, within ABZR86_RS19780 at 454.139 kb on + strand, within ABZR86_RS19780 at 454.139 kb on + strand, within ABZR86_RS19780 at 454.140 kb on - strand, within ABZR86_RS19780 at 454.140 kb on - strand, within ABZR86_RS19780 at 454.140 kb on - strand, within ABZR86_RS19780 at 454.140 kb on - strand, within ABZR86_RS19780 at 454.158 kb on + strand, within ABZR86_RS19780 at 454.158 kb on + strand, within ABZR86_RS19780 at 454.159 kb on - strand, within ABZR86_RS19780 at 454.159 kb on - strand, within ABZR86_RS19780 at 454.159 kb on - strand, within ABZR86_RS19780 at 454.159 kb on - strand, within ABZR86_RS19780 at 454.159 kb on - strand, within ABZR86_RS19780 at 454.171 kb on + strand, within ABZR86_RS19780 at 454.171 kb on + strand, within ABZR86_RS19780 at 454.171 kb on + strand, within ABZR86_RS19780 at 454.171 kb on + strand, within ABZR86_RS19780 at 454.172 kb on - strand, within ABZR86_RS19780 at 454.172 kb on - strand, within ABZR86_RS19780 at 454.172 kb on - strand, within ABZR86_RS19780 at 454.245 kb on + strand, within ABZR86_RS19780 at 454.246 kb on - strand, within ABZR86_RS19780 at 454.687 kb on + strand at 454.687 kb on + strand at 454.687 kb on + strand at 454.687 kb on + strand at 454.688 kb on - strand at 454.688 kb on - strand at 454.740 kb on - strand at 454.740 kb on - strand at 454.893 kb on + strand at 454.893 kb on + strand at 454.893 kb on + strand at 454.894 kb on - strand at 454.894 kb on - strand at 454.894 kb on - strand at 454.894 kb on - strand at 455.025 kb on + strand at 455.026 kb on - strand at 455.026 kb on - strand at 455.026 kb on - strand at 455.026 kb on - strand at 455.026 kb on - strand at 455.138 kb on + strand, within ABZR86_RS19785 at 455.139 kb on - strand, within ABZR86_RS19785 at 455.139 kb on - strand, within ABZR86_RS19785 at 455.139 kb on - strand, within ABZR86_RS19785 at 455.139 kb on - strand, within ABZR86_RS19785 at 455.139 kb on - strand, within ABZR86_RS19785 at 455.139 kb on - strand, within ABZR86_RS19785 at 455.177 kb on + strand, within ABZR86_RS19785 at 455.177 kb on + strand, within ABZR86_RS19785 at 455.177 kb on + strand, within ABZR86_RS19785 at 455.177 kb on + strand, within ABZR86_RS19785 at 455.177 kb on + strand, within ABZR86_RS19785 at 455.177 kb on + strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.178 kb on - strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.222 kb on + strand, within ABZR86_RS19785 at 455.223 kb on - strand, within ABZR86_RS19785 at 455.223 kb on - strand, within ABZR86_RS19785 at 455.223 kb on - strand, within ABZR86_RS19785 at 455.223 kb on - strand, within ABZR86_RS19785 at 455.223 kb on - strand, within ABZR86_RS19785 at 455.451 kb on - strand, within ABZR86_RS19785 at 455.451 kb on - strand, within ABZR86_RS19785 at 455.717 kb on + strand, within ABZR86_RS19785 at 455.717 kb on + strand, within ABZR86_RS19785 at 456.041 kb on + strand, within ABZR86_RS19785 at 456.242 kb on + strand, within ABZR86_RS19785 at 456.242 kb on + strand, within ABZR86_RS19785 at 456.243 kb on - strand, within ABZR86_RS19785 at 456.243 kb on - strand, within ABZR86_RS19785 at 456.315 kb on - strand, within ABZR86_RS19785 at 456.315 kb on - strand, within ABZR86_RS19785 at 456.695 kb on + strand at 456.695 kb on + strand at 456.695 kb on + strand at 456.695 kb on + strand at 456.695 kb on + strand at 456.695 kb on + strand at 456.695 kb on + strand at 456.696 kb on - strand at 456.696 kb on - strand at 456.696 kb on - strand at 456.696 kb on - strand at 456.696 kb on - strand at 456.696 kb on - strand at 456.720 kb on - strand at 456.889 kb on + strand, within ABZR86_RS19790 at 456.889 kb on + strand, within ABZR86_RS19790 at 456.889 kb on + strand, within ABZR86_RS19790 at 456.890 kb on - strand, within ABZR86_RS19790 at 456.890 kb on - strand, within ABZR86_RS19790 at 456.890 kb on - strand, within ABZR86_RS19790 at 456.890 kb on - strand, within ABZR86_RS19790 at 456.890 kb on - strand, within ABZR86_RS19790 at 456.890 kb on - strand, within ABZR86_RS19790 at 456.964 kb on + strand at 456.964 kb on + strand at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.059 kb on + strand, within ABZR86_RS19795 at 457.060 kb on - strand, within ABZR86_RS19795 at 457.060 kb on - strand, within ABZR86_RS19795 at 457.068 kb on - strand, within ABZR86_RS19795 at 457.301 kb on + strand, within ABZR86_RS19795 at 457.301 kb on + strand, within ABZR86_RS19795 at 457.301 kb on + strand, within ABZR86_RS19795 at 457.301 kb on + strand, within ABZR86_RS19795 at 457.301 kb on + strand, within ABZR86_RS19795 at 457.302 kb on - strand, within ABZR86_RS19795 at 457.400 kb on + strand at 457.400 kb on + strand at 457.400 kb on + strand at 457.401 kb on - strand at 457.401 kb on - strand at 457.401 kb on - strand at 457.401 kb on - strand at 457.401 kb on - strand at 457.401 kb on - strand at 457.486 kb on + strand at 457.486 kb on + strand at 457.486 kb on + strand at 457.487 kb on - strand at 457.487 kb on - strand at 457.487 kb on - strand at 457.534 kb on + strand, within ABZR86_RS19800 at 457.534 kb on + strand, within ABZR86_RS19800 at 457.534 kb on + strand, within ABZR86_RS19800 at 457.534 kb on + strand, within ABZR86_RS19800 at 457.534 kb on + strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.535 kb on - strand, within ABZR86_RS19800 at 457.589 kb on + strand, within ABZR86_RS19800 at 457.590 kb on - strand, within ABZR86_RS19800 at 457.600 kb on + strand, within ABZR86_RS19800 at 457.600 kb on + strand, within ABZR86_RS19800 at 457.600 kb on + strand, within ABZR86_RS19800 at 457.601 kb on - strand, within ABZR86_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 454,084 + ABZR86_RS19780 0.26 -0.8 454,139 + ABZR86_RS19780 0.32 +0.2 454,139 + ABZR86_RS19780 0.32 +0.3 454,139 + ABZR86_RS19780 0.32 -1.3 454,139 + ABZR86_RS19780 0.32 +0.5 454,139 + ABZR86_RS19780 0.32 -0.4 454,139 + ABZR86_RS19780 0.32 -0.2 454,140 - ABZR86_RS19780 0.33 +0.2 454,140 - ABZR86_RS19780 0.33 +0.2 454,140 - ABZR86_RS19780 0.33 +0.4 454,140 - ABZR86_RS19780 0.33 -0.2 454,158 + ABZR86_RS19780 0.35 -0.2 454,158 + ABZR86_RS19780 0.35 +0.3 454,159 - ABZR86_RS19780 0.35 -1.5 454,159 - ABZR86_RS19780 0.35 -0.1 454,159 - ABZR86_RS19780 0.35 -0.5 454,159 - ABZR86_RS19780 0.35 -2.1 454,159 - ABZR86_RS19780 0.35 +1.5 454,171 + ABZR86_RS19780 0.36 -0.0 454,171 + ABZR86_RS19780 0.36 -0.5 454,171 + ABZR86_RS19780 0.36 -1.3 454,171 + ABZR86_RS19780 0.36 -1.1 454,172 - ABZR86_RS19780 0.36 -0.8 454,172 - ABZR86_RS19780 0.36 -1.0 454,172 - ABZR86_RS19780 0.36 -0.2 454,245 + ABZR86_RS19780 0.44 +0.4 454,246 - ABZR86_RS19780 0.45 -1.4 454,687 + -0.6 454,687 + +0.2 454,687 + -0.1 454,687 + -0.5 454,688 - -0.1 454,688 - -0.1 454,740 - +0.2 454,740 - -1.4 454,893 + -0.4 454,893 + +0.4 454,893 + -0.2 454,894 - +1.2 454,894 - +0.1 454,894 - -0.4 454,894 - -0.2 455,025 + -1.1 455,026 - -1.4 455,026 - -1.9 455,026 - -0.6 455,026 - -0.6 455,026 - -1.0 455,138 + ABZR86_RS19785 0.15 -2.2 455,139 - ABZR86_RS19785 0.15 +0.1 455,139 - ABZR86_RS19785 0.15 -0.5 455,139 - ABZR86_RS19785 0.15 -0.2 455,139 - ABZR86_RS19785 0.15 -1.1 455,139 - ABZR86_RS19785 0.15 -0.9 455,139 - ABZR86_RS19785 0.15 -0.9 455,177 + ABZR86_RS19785 0.17 -1.8 455,177 + ABZR86_RS19785 0.17 +0.7 455,177 + ABZR86_RS19785 0.17 -0.4 455,177 + ABZR86_RS19785 0.17 -3.3 455,177 + ABZR86_RS19785 0.17 -1.4 455,177 + ABZR86_RS19785 0.17 -1.2 455,178 - ABZR86_RS19785 0.17 -0.5 455,178 - ABZR86_RS19785 0.17 -1.0 455,178 - ABZR86_RS19785 0.17 -1.9 455,178 - ABZR86_RS19785 0.17 -0.8 455,178 - ABZR86_RS19785 0.17 -2.1 455,178 - ABZR86_RS19785 0.17 -1.5 455,178 - ABZR86_RS19785 0.17 -1.2 455,222 + ABZR86_RS19785 0.19 -2.9 455,222 + ABZR86_RS19785 0.19 -2.1 455,222 + ABZR86_RS19785 0.19 -1.9 455,222 + ABZR86_RS19785 0.19 -3.2 455,222 + ABZR86_RS19785 0.19 -1.2 455,222 + ABZR86_RS19785 0.19 -2.9 455,222 + ABZR86_RS19785 0.19 -1.6 455,223 - ABZR86_RS19785 0.20 -1.7 455,223 - ABZR86_RS19785 0.20 +0.8 455,223 - ABZR86_RS19785 0.20 -2.8 455,223 - ABZR86_RS19785 0.20 -2.1 455,223 - ABZR86_RS19785 0.20 -0.1 455,451 - ABZR86_RS19785 0.33 -1.8 455,451 - ABZR86_RS19785 0.33 -2.7 455,717 + ABZR86_RS19785 0.48 -0.9 455,717 + ABZR86_RS19785 0.48 -0.8 456,041 + ABZR86_RS19785 0.67 -0.2 456,242 + ABZR86_RS19785 0.78 -0.6 456,242 + ABZR86_RS19785 0.78 -1.6 456,243 - ABZR86_RS19785 0.78 -0.3 456,243 - ABZR86_RS19785 0.78 -1.2 456,315 - ABZR86_RS19785 0.83 -0.4 456,315 - ABZR86_RS19785 0.83 -1.6 456,695 + -0.1 456,695 + -1.6 456,695 + -0.8 456,695 + -0.9 456,695 + -0.4 456,695 + -1.8 456,695 + -0.8 456,696 - -0.9 456,696 - -1.4 456,696 - +0.3 456,696 - -1.1 456,696 - -0.5 456,696 - -0.1 456,720 - +0.5 456,889 + ABZR86_RS19790 0.63 +0.2 456,889 + ABZR86_RS19790 0.63 -1.8 456,889 + ABZR86_RS19790 0.63 -1.5 456,890 - ABZR86_RS19790 0.64 -0.8 456,890 - ABZR86_RS19790 0.64 +0.0 456,890 - ABZR86_RS19790 0.64 -0.2 456,890 - ABZR86_RS19790 0.64 -1.0 456,890 - ABZR86_RS19790 0.64 -0.1 456,890 - ABZR86_RS19790 0.64 -0.5 456,964 + -1.5 456,964 + -1.0 457,059 + ABZR86_RS19795 0.20 +0.6 457,059 + ABZR86_RS19795 0.20 +0.8 457,059 + ABZR86_RS19795 0.20 +1.2 457,059 + ABZR86_RS19795 0.20 +1.2 457,059 + ABZR86_RS19795 0.20 +1.1 457,059 + ABZR86_RS19795 0.20 +1.8 457,059 + ABZR86_RS19795 0.20 +2.3 457,059 + ABZR86_RS19795 0.20 +1.7 457,059 + ABZR86_RS19795 0.20 +3.6 457,059 + ABZR86_RS19795 0.20 +1.9 457,060 - ABZR86_RS19795 0.20 +2.9 457,060 - ABZR86_RS19795 0.20 +3.5 457,068 - ABZR86_RS19795 0.22 +3.7 457,301 + ABZR86_RS19795 0.82 +2.3 457,301 + ABZR86_RS19795 0.82 +1.4 457,301 + ABZR86_RS19795 0.82 +1.7 457,301 + ABZR86_RS19795 0.82 +1.3 457,301 + ABZR86_RS19795 0.82 +0.7 457,302 - ABZR86_RS19795 0.82 +3.2 457,400 + +0.9 457,400 + +1.2 457,400 + +1.6 457,401 - -0.8 457,401 - +0.8 457,401 - +0.8 457,401 - +0.1 457,401 - +0.8 457,401 - +0.7 457,486 + +1.4 457,486 + +1.0 457,486 + +0.9 457,487 - +1.6 457,487 - +1.0 457,487 - +0.6 457,534 + ABZR86_RS19800 0.14 +1.6 457,534 + ABZR86_RS19800 0.14 +0.6 457,534 + ABZR86_RS19800 0.14 +1.0 457,534 + ABZR86_RS19800 0.14 -1.4 457,534 + ABZR86_RS19800 0.14 +1.0 457,535 - ABZR86_RS19800 0.14 +0.8 457,535 - ABZR86_RS19800 0.14 +0.5 457,535 - ABZR86_RS19800 0.14 +0.3 457,535 - ABZR86_RS19800 0.14 +1.1 457,535 - ABZR86_RS19800 0.14 +0.4 457,535 - ABZR86_RS19800 0.14 +0.7 457,535 - ABZR86_RS19800 0.14 +1.1 457,535 - ABZR86_RS19800 0.14 +4.7 457,535 - ABZR86_RS19800 0.14 -0.1 457,535 - ABZR86_RS19800 0.14 +0.4 457,535 - ABZR86_RS19800 0.14 +1.9 457,589 + ABZR86_RS19800 0.20 +1.9 457,590 - ABZR86_RS19800 0.20 +0.8 457,600 + ABZR86_RS19800 0.21 +0.9 457,600 + ABZR86_RS19800 0.21 +1.6 457,600 + ABZR86_RS19800 0.21 +1.1 457,601 - ABZR86_RS19800 0.21 +1.2
Or see this region's nucleotide sequence