Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19625 and ABZR86_RS19630 are separated by 15 nucleotides ABZR86_RS19630 and ABZR86_RS19635 are separated by 296 nucleotides ABZR86_RS19635 and ABZR86_RS19640 are separated by 76 nucleotides ABZR86_RS19640 and ABZR86_RS19645 are separated by 41 nucleotides ABZR86_RS19645 and ABZR86_RS19650 are separated by 149 nucleotides ABZR86_RS19650 and ABZR86_RS19655 are separated by 88 nucleotides
ABZR86_RS19625: ABZR86_RS19625 - SH3 domain-containing protein, at 408,660 to 410,051
_RS19625
ABZR86_RS19630: ABZR86_RS19630 - hypothetical protein, at 410,067 to 410,204
_RS19630
ABZR86_RS19635: ABZR86_RS19635 - hypothetical protein, at 410,501 to 410,824
_RS19635
ABZR86_RS19640: ABZR86_RS19640 - hypothetical protein, at 410,901 to 411,158
_RS19640
ABZR86_RS19645: ABZR86_RS19645 - hypothetical protein, at 411,200 to 411,493
_RS19645
ABZR86_RS19650: ABZR86_RS19650 - hypothetical protein, at 411,643 to 411,834
_RS19650
ABZR86_RS19655: ABZR86_RS19655 - alpha/beta hydrolase, at 411,923 to 412,918
_RS19655
Position (kb) 410
411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.082 kb on + strand, within ABZR86_RS19630 at 410.083 kb on - strand, within ABZR86_RS19630 at 410.410 kb on - strand at 410.500 kb on + strand at 410.694 kb on - strand, within ABZR86_RS19635 at 410.694 kb on - strand, within ABZR86_RS19635 at 410.799 kb on - strand at 410.970 kb on + strand, within ABZR86_RS19640 at 410.970 kb on + strand, within ABZR86_RS19640 at 411.027 kb on + strand, within ABZR86_RS19640 at 411.028 kb on - strand, within ABZR86_RS19640 at 411.085 kb on - strand, within ABZR86_RS19640 at 411.206 kb on + strand at 411.206 kb on + strand at 411.207 kb on - strand at 411.207 kb on - strand at 411.231 kb on + strand, within ABZR86_RS19645 at 411.356 kb on - strand, within ABZR86_RS19645 at 411.494 kb on + strand at 411.495 kb on - strand at 411.504 kb on + strand at 411.504 kb on + strand at 411.505 kb on - strand at 411.588 kb on + strand at 411.588 kb on + strand at 411.588 kb on + strand at 411.858 kb on + strand at 411.890 kb on + strand at 411.890 kb on + strand at 411.890 kb on + strand at 411.891 kb on - strand at 411.902 kb on + strand at 411.903 kb on - strand at 411.921 kb on + strand at 412.013 kb on + strand at 412.013 kb on + strand at 412.014 kb on - strand at 412.047 kb on + strand, within ABZR86_RS19655 at 412.048 kb on - strand, within ABZR86_RS19655 at 412.111 kb on + strand, within ABZR86_RS19655 at 412.111 kb on + strand, within ABZR86_RS19655 at 412.111 kb on + strand, within ABZR86_RS19655 at 412.111 kb on + strand, within ABZR86_RS19655 at 412.111 kb on + strand, within ABZR86_RS19655 at 412.120 kb on + strand, within ABZR86_RS19655 at 412.120 kb on + strand, within ABZR86_RS19655 at 412.120 kb on + strand, within ABZR86_RS19655 at 412.121 kb on - strand, within ABZR86_RS19655 at 412.121 kb on - strand, within ABZR86_RS19655
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 410,082 + ABZR86_RS19630 0.11 -0.6 410,083 - ABZR86_RS19630 0.12 -0.7 410,410 - +0.8 410,500 + +0.4 410,694 - ABZR86_RS19635 0.60 +0.8 410,694 - ABZR86_RS19635 0.60 -1.3 410,799 - -0.8 410,970 + ABZR86_RS19640 0.27 -0.3 410,970 + ABZR86_RS19640 0.27 +0.2 411,027 + ABZR86_RS19640 0.49 -0.8 411,028 - ABZR86_RS19640 0.49 -1.4 411,085 - ABZR86_RS19640 0.71 -2.8 411,206 + +0.6 411,206 + -0.5 411,207 - -1.2 411,207 - -1.8 411,231 + ABZR86_RS19645 0.11 +0.2 411,356 - ABZR86_RS19645 0.53 +0.4 411,494 + +0.2 411,495 - +1.1 411,504 + -0.3 411,504 + +0.4 411,505 - +0.9 411,588 + +0.3 411,588 + -0.1 411,588 + -0.1 411,858 + -0.1 411,890 + -0.1 411,890 + -0.3 411,890 + +0.7 411,891 - -0.9 411,902 + +2.5 411,903 - -0.8 411,921 + -0.0 412,013 + -0.4 412,013 + -0.1 412,014 - -2.0 412,047 + ABZR86_RS19655 0.12 -0.0 412,048 - ABZR86_RS19655 0.13 -0.3 412,111 + ABZR86_RS19655 0.19 +1.1 412,111 + ABZR86_RS19655 0.19 -0.4 412,111 + ABZR86_RS19655 0.19 -0.2 412,111 + ABZR86_RS19655 0.19 +0.2 412,111 + ABZR86_RS19655 0.19 -1.4 412,120 + ABZR86_RS19655 0.20 -0.1 412,120 + ABZR86_RS19655 0.20 +0.1 412,120 + ABZR86_RS19655 0.20 +0.5 412,121 - ABZR86_RS19655 0.20 +0.2 412,121 - ABZR86_RS19655 0.20 -2.7
Or see this region's nucleotide sequence