Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19255

Experiment: Nalidixic 0.08 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS19245 and ABZR86_RS19250 overlap by 4 nucleotidesABZR86_RS19250 and ABZR86_RS19255 are separated by 83 nucleotidesABZR86_RS19255 and ABZR86_RS19260 are separated by 473 nucleotides ABZR86_RS19245: ABZR86_RS19245 - glycosyltransferase family 2 protein, at 306,211 to 307,107 _RS19245 ABZR86_RS19250: ABZR86_RS19250 - DMT family transporter, at 307,104 to 308,006 _RS19250 ABZR86_RS19255: ABZR86_RS19255 - DUF2127 domain-containing protein, at 308,090 to 308,599 _RS19255 ABZR86_RS19260: ABZR86_RS19260 - filamentous hemagglutinin N-terminal domain-containing protein, at 309,073 to 311,274 _RS19260 Position (kb) 308 309Strain fitness (log2 ratio) -2 -1 0 1 2at 307.382 kb on + strand, within ABZR86_RS19250at 307.382 kb on + strand, within ABZR86_RS19250at 307.383 kb on - strand, within ABZR86_RS19250at 307.383 kb on - strand, within ABZR86_RS19250at 307.383 kb on - strand, within ABZR86_RS19250at 307.383 kb on - strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.419 kb on + strand, within ABZR86_RS19250at 307.420 kb on - strand, within ABZR86_RS19250at 307.420 kb on - strand, within ABZR86_RS19250at 307.420 kb on - strand, within ABZR86_RS19250at 307.420 kb on - strand, within ABZR86_RS19250at 307.585 kb on - strand, within ABZR86_RS19250at 307.585 kb on - strand, within ABZR86_RS19250at 307.746 kb on + strand, within ABZR86_RS19250at 307.746 kb on + strand, within ABZR86_RS19250at 307.746 kb on + strand, within ABZR86_RS19250at 307.746 kb on + strand, within ABZR86_RS19250at 307.747 kb on - strand, within ABZR86_RS19250at 307.747 kb on - strand, within ABZR86_RS19250at 307.747 kb on - strand, within ABZR86_RS19250at 307.806 kb on - strand, within ABZR86_RS19250at 307.938 kb on + strandat 307.938 kb on + strandat 307.938 kb on + strandat 307.939 kb on - strandat 307.939 kb on - strandat 308.004 kb on + strandat 308.005 kb on - strandat 308.091 kb on + strandat 308.091 kb on + strandat 308.091 kb on + strandat 308.152 kb on + strand, within ABZR86_RS19255at 308.206 kb on - strand, within ABZR86_RS19255at 308.277 kb on - strand, within ABZR86_RS19255at 308.277 kb on - strand, within ABZR86_RS19255at 308.311 kb on - strand, within ABZR86_RS19255at 308.514 kb on + strand, within ABZR86_RS19255at 308.514 kb on + strand, within ABZR86_RS19255at 308.515 kb on - strand, within ABZR86_RS19255at 308.515 kb on - strand, within ABZR86_RS19255at 308.612 kb on - strandat 308.788 kb on + strandat 308.788 kb on + strandat 308.789 kb on - strandat 309.051 kb on + strandat 309.052 kb on - strandat 309.066 kb on + strandat 309.066 kb on + strandat 309.066 kb on + strandat 309.067 kb on - strandat 309.094 kb on + strandat 309.095 kb on - strandat 309.180 kb on + strandat 309.180 kb on + strandat 309.181 kb on - strandat 309.195 kb on + strandat 309.196 kb on - strandat 309.221 kb on + strandat 309.221 kb on + strandat 309.221 kb on + strandat 309.222 kb on - strandat 309.280 kb on - strandat 309.280 kb on - strandat 309.280 kb on - strandat 309.280 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
remove
307,382 + ABZR86_RS19250 0.31 +0.2
307,382 + ABZR86_RS19250 0.31 +0.3
307,383 - ABZR86_RS19250 0.31 -1.9
307,383 - ABZR86_RS19250 0.31 -0.1
307,383 - ABZR86_RS19250 0.31 -0.5
307,383 - ABZR86_RS19250 0.31 -0.4
307,419 + ABZR86_RS19250 0.35 +1.0
307,419 + ABZR86_RS19250 0.35 +1.4
307,419 + ABZR86_RS19250 0.35 -1.4
307,419 + ABZR86_RS19250 0.35 -0.7
307,419 + ABZR86_RS19250 0.35 -0.3
307,419 + ABZR86_RS19250 0.35 +0.9
307,419 + ABZR86_RS19250 0.35 -2.0
307,419 + ABZR86_RS19250 0.35 -0.6
307,419 + ABZR86_RS19250 0.35 +0.3
307,419 + ABZR86_RS19250 0.35 +0.2
307,419 + ABZR86_RS19250 0.35 -0.9
307,419 + ABZR86_RS19250 0.35 +0.1
307,420 - ABZR86_RS19250 0.35 -0.3
307,420 - ABZR86_RS19250 0.35 -0.1
307,420 - ABZR86_RS19250 0.35 +0.1
307,420 - ABZR86_RS19250 0.35 -1.2
307,585 - ABZR86_RS19250 0.53 -0.2
307,585 - ABZR86_RS19250 0.53 -0.1
307,746 + ABZR86_RS19250 0.71 +2.5
307,746 + ABZR86_RS19250 0.71 -0.1
307,746 + ABZR86_RS19250 0.71 -0.1
307,746 + ABZR86_RS19250 0.71 -0.1
307,747 - ABZR86_RS19250 0.71 -0.2
307,747 - ABZR86_RS19250 0.71 -1.5
307,747 - ABZR86_RS19250 0.71 +0.3
307,806 - ABZR86_RS19250 0.78 +0.2
307,938 + -1.1
307,938 + +0.2
307,938 + +1.0
307,939 - -2.1
307,939 - -1.1
308,004 + +0.4
308,005 - +0.4
308,091 + +0.9
308,091 + +0.5
308,091 + +0.5
308,152 + ABZR86_RS19255 0.12 -0.5
308,206 - ABZR86_RS19255 0.23 +0.5
308,277 - ABZR86_RS19255 0.37 -0.7
308,277 - ABZR86_RS19255 0.37 +0.2
308,311 - ABZR86_RS19255 0.43 -0.1
308,514 + ABZR86_RS19255 0.83 +0.5
308,514 + ABZR86_RS19255 0.83 -0.5
308,515 - ABZR86_RS19255 0.83 -0.3
308,515 - ABZR86_RS19255 0.83 -0.4
308,612 - -0.7
308,788 + +0.1
308,788 + -1.0
308,789 - +0.1
309,051 + -0.7
309,052 - +0.0
309,066 + -0.1
309,066 + -1.3
309,066 + +0.2
309,067 - +0.0
309,094 + +0.2
309,095 - +0.3
309,180 + +2.1
309,180 + -0.2
309,181 - -0.4
309,195 + -1.2
309,196 - -0.6
309,221 + -0.0
309,221 + +0.1
309,221 + -0.8
309,222 - -0.2
309,280 - +0.4
309,280 - -0.3
309,280 - -1.7
309,280 - +0.3

Or see this region's nucleotide sequence