Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19215 and ABZR86_RS19220 are separated by 60 nucleotides ABZR86_RS19220 and ABZR86_RS19225 are separated by 44 nucleotides ABZR86_RS19225 and ABZR86_RS19230 are separated by 90 nucleotides
ABZR86_RS19215: ABZR86_RS19215 - class I SAM-dependent methyltransferase, at 298,156 to 298,902
_RS19215
ABZR86_RS19220: ABZR86_RS19220 - RDD family protein, at 298,963 to 299,469
_RS19220
ABZR86_RS19225: ABZR86_RS19225 - site-specific tyrosine recombinase XerD, at 299,514 to 300,425
_RS19225
ABZR86_RS19230: ABZR86_RS19230 - DsbC family protein, at 300,516 to 301,307
_RS19230
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.604 kb on + strand, within ABZR86_RS19215 at 298.604 kb on + strand, within ABZR86_RS19215 at 298.605 kb on - strand, within ABZR86_RS19215 at 298.785 kb on + strand, within ABZR86_RS19215 at 298.785 kb on + strand, within ABZR86_RS19215 at 298.836 kb on - strand at 298.836 kb on - strand at 298.836 kb on - strand at 298.908 kb on + strand at 298.909 kb on - strand at 299.255 kb on + strand, within ABZR86_RS19220 at 299.255 kb on + strand, within ABZR86_RS19220 at 299.256 kb on - strand, within ABZR86_RS19220 at 299.289 kb on - strand, within ABZR86_RS19220 at 299.357 kb on + strand, within ABZR86_RS19220 at 299.358 kb on - strand, within ABZR86_RS19220 at 299.358 kb on - strand, within ABZR86_RS19220 at 299.358 kb on - strand, within ABZR86_RS19220 at 299.399 kb on + strand, within ABZR86_RS19220 at 299.400 kb on - strand, within ABZR86_RS19220 at 299.495 kb on + strand at 299.534 kb on + strand at 299.534 kb on + strand at 299.534 kb on + strand at 299.535 kb on - strand at 299.535 kb on - strand at 299.535 kb on - strand at 299.709 kb on + strand, within ABZR86_RS19225 at 299.773 kb on - strand, within ABZR86_RS19225 at 299.773 kb on - strand, within ABZR86_RS19225 at 299.776 kb on - strand, within ABZR86_RS19225 at 299.955 kb on + strand, within ABZR86_RS19225 at 299.956 kb on - strand, within ABZR86_RS19225 at 299.956 kb on - strand, within ABZR86_RS19225 at 299.956 kb on - strand, within ABZR86_RS19225 at 300.103 kb on - strand, within ABZR86_RS19225 at 300.363 kb on + strand at 300.364 kb on - strand at 300.364 kb on - strand at 300.364 kb on - strand at 300.365 kb on + strand at 300.366 kb on - strand at 300.714 kb on + strand, within ABZR86_RS19230 at 300.714 kb on + strand, within ABZR86_RS19230 at 300.715 kb on - strand, within ABZR86_RS19230 at 300.744 kb on + strand, within ABZR86_RS19230 at 300.744 kb on + strand, within ABZR86_RS19230 at 300.745 kb on - strand, within ABZR86_RS19230 at 300.745 kb on - strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.765 kb on + strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.766 kb on - strand, within ABZR86_RS19230 at 300.904 kb on - strand, within ABZR86_RS19230 at 300.904 kb on - strand, within ABZR86_RS19230 at 300.999 kb on + strand, within ABZR86_RS19230 at 300.999 kb on + strand, within ABZR86_RS19230 at 300.999 kb on + strand, within ABZR86_RS19230 at 300.999 kb on + strand, within ABZR86_RS19230 at 301.000 kb on - strand, within ABZR86_RS19230 at 301.000 kb on - strand, within ABZR86_RS19230 at 301.000 kb on - strand, within ABZR86_RS19230 at 301.000 kb on - strand, within ABZR86_RS19230 at 301.056 kb on + strand, within ABZR86_RS19230 at 301.056 kb on + strand, within ABZR86_RS19230 at 301.056 kb on + strand, within ABZR86_RS19230 at 301.056 kb on + strand, within ABZR86_RS19230 at 301.057 kb on - strand, within ABZR86_RS19230 at 301.057 kb on - strand, within ABZR86_RS19230 at 301.057 kb on - strand, within ABZR86_RS19230 at 301.057 kb on - strand, within ABZR86_RS19230 at 301.058 kb on + strand, within ABZR86_RS19230 at 301.059 kb on - strand, within ABZR86_RS19230 at 301.245 kb on + strand at 301.245 kb on + strand at 301.245 kb on + strand at 301.246 kb on - strand at 301.246 kb on - strand at 301.246 kb on - strand at 301.246 kb on - strand at 301.246 kb on - strand at 301.325 kb on + strand at 301.325 kb on + strand at 301.325 kb on + strand at 301.326 kb on - strand at 301.326 kb on - strand at 301.326 kb on - strand at 301.326 kb on - strand at 301.326 kb on - strand at 301.326 kb on - strand at 301.363 kb on + strand at 301.363 kb on + strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.367 kb on + strand at 301.367 kb on + strand at 301.410 kb on + strand at 301.410 kb on + strand at 301.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 298,604 + ABZR86_RS19215 0.60 -0.7 298,604 + ABZR86_RS19215 0.60 -0.0 298,605 - ABZR86_RS19215 0.60 -0.5 298,785 + ABZR86_RS19215 0.84 +0.4 298,785 + ABZR86_RS19215 0.84 +1.0 298,836 - +0.8 298,836 - -0.6 298,836 - +0.2 298,908 + -0.3 298,909 - -0.6 299,255 + ABZR86_RS19220 0.58 +0.3 299,255 + ABZR86_RS19220 0.58 +0.8 299,256 - ABZR86_RS19220 0.58 +0.0 299,289 - ABZR86_RS19220 0.64 +0.3 299,357 + ABZR86_RS19220 0.78 +0.3 299,358 - ABZR86_RS19220 0.78 -1.2 299,358 - ABZR86_RS19220 0.78 +0.5 299,358 - ABZR86_RS19220 0.78 +0.7 299,399 + ABZR86_RS19220 0.86 +0.8 299,400 - ABZR86_RS19220 0.86 -0.0 299,495 + +0.4 299,534 + -0.2 299,534 + +0.3 299,534 + -0.1 299,535 - +0.3 299,535 - -1.1 299,535 - -0.2 299,709 + ABZR86_RS19225 0.21 -0.7 299,773 - ABZR86_RS19225 0.28 -1.2 299,773 - ABZR86_RS19225 0.28 -1.1 299,776 - ABZR86_RS19225 0.29 -1.9 299,955 + ABZR86_RS19225 0.48 +0.4 299,956 - ABZR86_RS19225 0.48 -2.0 299,956 - ABZR86_RS19225 0.48 +0.7 299,956 - ABZR86_RS19225 0.48 -1.0 300,103 - ABZR86_RS19225 0.65 +1.1 300,363 + -1.1 300,364 - +0.9 300,364 - -0.3 300,364 - -0.8 300,365 + -0.4 300,366 - +0.0 300,714 + ABZR86_RS19230 0.25 +0.7 300,714 + ABZR86_RS19230 0.25 -0.9 300,715 - ABZR86_RS19230 0.25 -0.1 300,744 + ABZR86_RS19230 0.29 +0.4 300,744 + ABZR86_RS19230 0.29 -0.7 300,745 - ABZR86_RS19230 0.29 +0.5 300,745 - ABZR86_RS19230 0.29 +0.5 300,765 + ABZR86_RS19230 0.31 -0.2 300,765 + ABZR86_RS19230 0.31 +0.2 300,765 + ABZR86_RS19230 0.31 +0.3 300,765 + ABZR86_RS19230 0.31 +0.3 300,765 + ABZR86_RS19230 0.31 +0.9 300,765 + ABZR86_RS19230 0.31 -2.0 300,765 + ABZR86_RS19230 0.31 +0.5 300,765 + ABZR86_RS19230 0.31 +0.1 300,765 + ABZR86_RS19230 0.31 -0.2 300,765 + ABZR86_RS19230 0.31 -0.1 300,765 + ABZR86_RS19230 0.31 +0.2 300,765 + ABZR86_RS19230 0.31 -0.1 300,766 - ABZR86_RS19230 0.32 -0.8 300,766 - ABZR86_RS19230 0.32 +0.2 300,766 - ABZR86_RS19230 0.32 -0.1 300,766 - ABZR86_RS19230 0.32 -0.4 300,766 - ABZR86_RS19230 0.32 -0.9 300,766 - ABZR86_RS19230 0.32 +0.9 300,766 - ABZR86_RS19230 0.32 +1.3 300,766 - ABZR86_RS19230 0.32 +0.3 300,766 - ABZR86_RS19230 0.32 +0.3 300,766 - ABZR86_RS19230 0.32 +0.0 300,904 - ABZR86_RS19230 0.49 +0.8 300,904 - ABZR86_RS19230 0.49 +0.1 300,999 + ABZR86_RS19230 0.61 +0.0 300,999 + ABZR86_RS19230 0.61 +0.5 300,999 + ABZR86_RS19230 0.61 +0.9 300,999 + ABZR86_RS19230 0.61 -0.8 301,000 - ABZR86_RS19230 0.61 +0.4 301,000 - ABZR86_RS19230 0.61 +1.2 301,000 - ABZR86_RS19230 0.61 +0.2 301,000 - ABZR86_RS19230 0.61 -0.8 301,056 + ABZR86_RS19230 0.68 +0.6 301,056 + ABZR86_RS19230 0.68 -0.2 301,056 + ABZR86_RS19230 0.68 -0.4 301,056 + ABZR86_RS19230 0.68 -0.9 301,057 - ABZR86_RS19230 0.68 +0.0 301,057 - ABZR86_RS19230 0.68 -0.8 301,057 - ABZR86_RS19230 0.68 +0.3 301,057 - ABZR86_RS19230 0.68 -0.4 301,058 + ABZR86_RS19230 0.68 +0.2 301,059 - ABZR86_RS19230 0.69 +0.0 301,245 + +0.4 301,245 + +0.4 301,245 + +1.0 301,246 - -0.4 301,246 - -0.1 301,246 - +0.8 301,246 - +0.1 301,246 - +0.8 301,325 + -0.6 301,325 + -0.4 301,325 + +0.5 301,326 - -0.4 301,326 - -0.5 301,326 - -0.4 301,326 - -0.0 301,326 - +0.2 301,326 - +0.3 301,363 + -0.2 301,363 + +0.1 301,364 - -0.6 301,364 - -0.9 301,364 - -0.1 301,367 + -0.3 301,367 + +0.7 301,410 + +0.0 301,410 + +0.5 301,410 + -0.7
Or see this region's nucleotide sequence