Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19190

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19185 and ABZR86_RS19190 are separated by 12 nucleotidesABZR86_RS19190 and ABZR86_RS19195 overlap by 8 nucleotides ABZR86_RS19185: ABZR86_RS19185 - efflux RND transporter periplasmic adaptor subunit, at 288,890 to 290,050 _RS19185 ABZR86_RS19190: ABZR86_RS19190 - efflux RND transporter permease subunit, at 290,063 to 293,209 _RS19190 ABZR86_RS19195: ABZR86_RS19195 - efflux transporter outer membrane subunit, at 293,202 to 294,617 _RS19195 Position (kb) 290 291 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2at 289.151 kb on + strand, within ABZR86_RS19185at 289.151 kb on + strand, within ABZR86_RS19185at 289.173 kb on - strand, within ABZR86_RS19185at 289.173 kb on - strand, within ABZR86_RS19185at 289.229 kb on + strand, within ABZR86_RS19185at 289.229 kb on + strand, within ABZR86_RS19185at 289.230 kb on - strand, within ABZR86_RS19185at 289.230 kb on - strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 290.207 kb on + strandat 290.207 kb on + strandat 290.207 kb on + strandat 290.207 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.532 kb on - strand, within ABZR86_RS19190at 290.532 kb on - strand, within ABZR86_RS19190at 290.606 kb on + strand, within ABZR86_RS19190at 290.648 kb on + strand, within ABZR86_RS19190at 290.648 kb on + strand, within ABZR86_RS19190at 290.649 kb on - strand, within ABZR86_RS19190at 290.649 kb on - strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.904 kb on - strand, within ABZR86_RS19190at 290.904 kb on - strand, within ABZR86_RS19190at 291.129 kb on - strand, within ABZR86_RS19190at 291.129 kb on - strand, within ABZR86_RS19190at 291.129 kb on - strand, within ABZR86_RS19190at 291.225 kb on - strand, within ABZR86_RS19190at 291.461 kb on + strand, within ABZR86_RS19190at 291.462 kb on - strand, within ABZR86_RS19190at 291.462 kb on - strand, within ABZR86_RS19190at 291.507 kb on + strand, within ABZR86_RS19190at 291.638 kb on + strand, within ABZR86_RS19190at 291.639 kb on - strand, within ABZR86_RS19190at 292.247 kb on + strand, within ABZR86_RS19190at 292.322 kb on + strand, within ABZR86_RS19190at 292.322 kb on + strand, within ABZR86_RS19190at 292.323 kb on - strand, within ABZR86_RS19190at 292.323 kb on - strand, within ABZR86_RS19190at 292.323 kb on - strand, within ABZR86_RS19190at 292.505 kb on + strand, within ABZR86_RS19190at 292.640 kb on + strand, within ABZR86_RS19190at 292.640 kb on + strand, within ABZR86_RS19190at 292.679 kb on + strand, within ABZR86_RS19190at 292.680 kb on - strand, within ABZR86_RS19190at 292.680 kb on - strand, within ABZR86_RS19190at 292.680 kb on - strand, within ABZR86_RS19190at 292.680 kb on - strand, within ABZR86_RS19190at 292.680 kb on - strand, within ABZR86_RS19190at 292.724 kb on + strand, within ABZR86_RS19190at 292.826 kb on + strand, within ABZR86_RS19190at 292.827 kb on - strand, within ABZR86_RS19190at 292.827 kb on - strand, within ABZR86_RS19190at 292.827 kb on - strand, within ABZR86_RS19190at 293.207 kb on + strandat 293.207 kb on + strandat 293.208 kb on - strandat 293.208 kb on - strandat 293.388 kb on + strand, within ABZR86_RS19195at 293.388 kb on + strand, within ABZR86_RS19195at 293.389 kb on - strand, within ABZR86_RS19195at 293.389 kb on - strand, within ABZR86_RS19195at 293.389 kb on - strand, within ABZR86_RS19195at 293.389 kb on - strand, within ABZR86_RS19195at 293.589 kb on + strand, within ABZR86_RS19195at 293.589 kb on + strand, within ABZR86_RS19195at 293.913 kb on + strand, within ABZR86_RS19195at 293.914 kb on - strand, within ABZR86_RS19195

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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289,151 + ABZR86_RS19185 0.22 +1.8
289,151 + ABZR86_RS19185 0.22 +0.1
289,173 - ABZR86_RS19185 0.24 +0.3
289,173 - ABZR86_RS19185 0.24 -0.2
289,229 + ABZR86_RS19185 0.29 -1.5
289,229 + ABZR86_RS19185 0.29 +0.1
289,230 - ABZR86_RS19185 0.29 -0.7
289,230 - ABZR86_RS19185 0.29 +0.3
289,628 + ABZR86_RS19185 0.64 -0.8
289,628 + ABZR86_RS19185 0.64 +0.4
289,628 + ABZR86_RS19185 0.64 -0.6
289,628 + ABZR86_RS19185 0.64 -0.4
289,629 - ABZR86_RS19185 0.64 -1.5
289,629 - ABZR86_RS19185 0.64 -0.4
289,629 - ABZR86_RS19185 0.64 -0.5
289,629 - ABZR86_RS19185 0.64 -0.1
289,629 - ABZR86_RS19185 0.64 -0.6
289,742 + ABZR86_RS19185 0.73 -1.1
289,742 + ABZR86_RS19185 0.73 -1.1
289,742 + ABZR86_RS19185 0.73 -0.8
289,742 + ABZR86_RS19185 0.73 -0.5
289,742 + ABZR86_RS19185 0.73 -0.8
289,742 + ABZR86_RS19185 0.73 +0.4
289,742 + ABZR86_RS19185 0.73 -2.3
289,742 + ABZR86_RS19185 0.73 +0.5
289,742 + ABZR86_RS19185 0.73 -0.5
289,742 + ABZR86_RS19185 0.73 -0.1
289,742 + ABZR86_RS19185 0.73 -0.1
289,742 + ABZR86_RS19185 0.73 -1.1
289,742 + ABZR86_RS19185 0.73 +2.0
289,742 + ABZR86_RS19185 0.73 +1.1
289,743 - ABZR86_RS19185 0.73 +0.4
289,743 - ABZR86_RS19185 0.73 -0.3
289,743 - ABZR86_RS19185 0.73 -0.3
289,743 - ABZR86_RS19185 0.73 -0.0
289,743 - ABZR86_RS19185 0.73 -0.2
290,207 + -0.7
290,207 + -0.1
290,207 + -0.3
290,207 + -0.5
290,291 + -0.5
290,291 + -1.1
290,291 + +0.0
290,291 + -1.2
290,291 + -0.8
290,291 + +0.5
290,291 + +0.3
290,291 + -0.7
290,292 - +0.7
290,292 - -0.9
290,292 - -0.8
290,292 - +0.8
290,292 - -0.0
290,292 - +1.2
290,292 - -0.2
290,292 - -0.6
290,292 - -0.7
290,292 - +0.1
290,292 - -0.5
290,292 - +0.3
290,292 - -1.5
290,292 - -0.3
290,292 - -1.1
290,532 - ABZR86_RS19190 0.15 -1.4
290,532 - ABZR86_RS19190 0.15 -0.8
290,606 + ABZR86_RS19190 0.17 +0.6
290,648 + ABZR86_RS19190 0.19 +0.4
290,648 + ABZR86_RS19190 0.19 +0.8
290,649 - ABZR86_RS19190 0.19 -0.5
290,649 - ABZR86_RS19190 0.19 +0.8
290,903 + ABZR86_RS19190 0.27 -1.3
290,903 + ABZR86_RS19190 0.27 -0.4
290,903 + ABZR86_RS19190 0.27 -0.1
290,903 + ABZR86_RS19190 0.27 -0.5
290,903 + ABZR86_RS19190 0.27 -0.6
290,903 + ABZR86_RS19190 0.27 -0.9
290,904 - ABZR86_RS19190 0.27 +2.1
290,904 - ABZR86_RS19190 0.27 -0.6
291,129 - ABZR86_RS19190 0.34 +0.3
291,129 - ABZR86_RS19190 0.34 -1.9
291,129 - ABZR86_RS19190 0.34 -0.4
291,225 - ABZR86_RS19190 0.37 -0.8
291,461 + ABZR86_RS19190 0.44 -0.9
291,462 - ABZR86_RS19190 0.44 -0.1
291,462 - ABZR86_RS19190 0.44 +0.3
291,507 + ABZR86_RS19190 0.46 -0.2
291,638 + ABZR86_RS19190 0.50 -0.0
291,639 - ABZR86_RS19190 0.50 -0.0
292,247 + ABZR86_RS19190 0.69 -0.2
292,322 + ABZR86_RS19190 0.72 +2.1
292,322 + ABZR86_RS19190 0.72 -0.1
292,323 - ABZR86_RS19190 0.72 +0.1
292,323 - ABZR86_RS19190 0.72 +0.0
292,323 - ABZR86_RS19190 0.72 +0.2
292,505 + ABZR86_RS19190 0.78 -0.7
292,640 + ABZR86_RS19190 0.82 -0.3
292,640 + ABZR86_RS19190 0.82 -0.6
292,679 + ABZR86_RS19190 0.83 +2.7
292,680 - ABZR86_RS19190 0.83 -0.1
292,680 - ABZR86_RS19190 0.83 -0.3
292,680 - ABZR86_RS19190 0.83 +0.7
292,680 - ABZR86_RS19190 0.83 +0.1
292,680 - ABZR86_RS19190 0.83 -0.1
292,724 + ABZR86_RS19190 0.85 -0.3
292,826 + ABZR86_RS19190 0.88 -0.4
292,827 - ABZR86_RS19190 0.88 +0.8
292,827 - ABZR86_RS19190 0.88 -1.1
292,827 - ABZR86_RS19190 0.88 +0.0
293,207 + -0.3
293,207 + +0.1
293,208 - +0.7
293,208 - +0.3
293,388 + ABZR86_RS19195 0.13 -0.2
293,388 + ABZR86_RS19195 0.13 -0.1
293,389 - ABZR86_RS19195 0.13 -0.9
293,389 - ABZR86_RS19195 0.13 +0.1
293,389 - ABZR86_RS19195 0.13 -0.9
293,389 - ABZR86_RS19195 0.13 +0.0
293,589 + ABZR86_RS19195 0.27 +0.1
293,589 + ABZR86_RS19195 0.27 -0.6
293,913 + ABZR86_RS19195 0.50 -0.1
293,914 - ABZR86_RS19195 0.50 +0.6

Or see this region's nucleotide sequence