Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19185

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19180 and ABZR86_RS19185 are separated by 281 nucleotidesABZR86_RS19185 and ABZR86_RS19190 are separated by 12 nucleotides ABZR86_RS19180: ABZR86_RS19180 - ROK family transcriptional regulator, at 287,409 to 288,608 _RS19180 ABZR86_RS19185: ABZR86_RS19185 - efflux RND transporter periplasmic adaptor subunit, at 288,890 to 290,050 _RS19185 ABZR86_RS19190: ABZR86_RS19190 - efflux RND transporter permease subunit, at 290,063 to 293,209 _RS19190 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2at 288.067 kb on - strand, within ABZR86_RS19180at 288.067 kb on - strand, within ABZR86_RS19180at 288.102 kb on + strand, within ABZR86_RS19180at 288.102 kb on + strand, within ABZR86_RS19180at 288.103 kb on - strand, within ABZR86_RS19180at 288.103 kb on - strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.121 kb on - strand, within ABZR86_RS19180at 288.190 kb on - strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.220 kb on - strand, within ABZR86_RS19180at 288.220 kb on - strand, within ABZR86_RS19180at 288.585 kb on + strandat 288.872 kb on + strandat 288.873 kb on - strandat 288.873 kb on - strandat 288.884 kb on - strandat 289.151 kb on + strand, within ABZR86_RS19185at 289.151 kb on + strand, within ABZR86_RS19185at 289.173 kb on - strand, within ABZR86_RS19185at 289.173 kb on - strand, within ABZR86_RS19185at 289.229 kb on + strand, within ABZR86_RS19185at 289.229 kb on + strand, within ABZR86_RS19185at 289.230 kb on - strand, within ABZR86_RS19185at 289.230 kb on - strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 290.207 kb on + strandat 290.207 kb on + strandat 290.207 kb on + strandat 290.207 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.532 kb on - strand, within ABZR86_RS19190at 290.532 kb on - strand, within ABZR86_RS19190at 290.606 kb on + strand, within ABZR86_RS19190at 290.648 kb on + strand, within ABZR86_RS19190at 290.648 kb on + strand, within ABZR86_RS19190at 290.649 kb on - strand, within ABZR86_RS19190at 290.649 kb on - strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.904 kb on - strand, within ABZR86_RS19190at 290.904 kb on - strand, within ABZR86_RS19190

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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288,067 - ABZR86_RS19180 0.55 -0.4
288,067 - ABZR86_RS19180 0.55 +0.1
288,102 + ABZR86_RS19180 0.58 +0.4
288,102 + ABZR86_RS19180 0.58 +1.7
288,103 - ABZR86_RS19180 0.58 -0.4
288,103 - ABZR86_RS19180 0.58 -0.3
288,120 + ABZR86_RS19180 0.59 -0.7
288,120 + ABZR86_RS19180 0.59 -0.3
288,120 + ABZR86_RS19180 0.59 -0.3
288,120 + ABZR86_RS19180 0.59 -0.2
288,121 - ABZR86_RS19180 0.59 -0.5
288,190 - ABZR86_RS19180 0.65 +0.2
288,219 + ABZR86_RS19180 0.68 -0.2
288,219 + ABZR86_RS19180 0.68 -0.1
288,219 + ABZR86_RS19180 0.68 -0.3
288,219 + ABZR86_RS19180 0.68 -0.3
288,220 - ABZR86_RS19180 0.68 -1.5
288,220 - ABZR86_RS19180 0.68 -0.5
288,585 + -0.3
288,872 + +0.1
288,873 - -0.6
288,873 - +1.8
288,884 - -0.4
289,151 + ABZR86_RS19185 0.22 +1.8
289,151 + ABZR86_RS19185 0.22 +0.1
289,173 - ABZR86_RS19185 0.24 +0.3
289,173 - ABZR86_RS19185 0.24 -0.2
289,229 + ABZR86_RS19185 0.29 -1.5
289,229 + ABZR86_RS19185 0.29 +0.1
289,230 - ABZR86_RS19185 0.29 -0.7
289,230 - ABZR86_RS19185 0.29 +0.3
289,628 + ABZR86_RS19185 0.64 -0.8
289,628 + ABZR86_RS19185 0.64 +0.4
289,628 + ABZR86_RS19185 0.64 -0.6
289,628 + ABZR86_RS19185 0.64 -0.4
289,629 - ABZR86_RS19185 0.64 -1.5
289,629 - ABZR86_RS19185 0.64 -0.4
289,629 - ABZR86_RS19185 0.64 -0.5
289,629 - ABZR86_RS19185 0.64 -0.1
289,629 - ABZR86_RS19185 0.64 -0.6
289,742 + ABZR86_RS19185 0.73 -1.1
289,742 + ABZR86_RS19185 0.73 -1.1
289,742 + ABZR86_RS19185 0.73 -0.8
289,742 + ABZR86_RS19185 0.73 -0.5
289,742 + ABZR86_RS19185 0.73 -0.8
289,742 + ABZR86_RS19185 0.73 +0.4
289,742 + ABZR86_RS19185 0.73 -2.3
289,742 + ABZR86_RS19185 0.73 +0.5
289,742 + ABZR86_RS19185 0.73 -0.5
289,742 + ABZR86_RS19185 0.73 -0.1
289,742 + ABZR86_RS19185 0.73 -0.1
289,742 + ABZR86_RS19185 0.73 -1.1
289,742 + ABZR86_RS19185 0.73 +2.0
289,742 + ABZR86_RS19185 0.73 +1.1
289,743 - ABZR86_RS19185 0.73 +0.4
289,743 - ABZR86_RS19185 0.73 -0.3
289,743 - ABZR86_RS19185 0.73 -0.3
289,743 - ABZR86_RS19185 0.73 -0.0
289,743 - ABZR86_RS19185 0.73 -0.2
290,207 + -0.7
290,207 + -0.1
290,207 + -0.3
290,207 + -0.5
290,291 + -0.5
290,291 + -1.1
290,291 + +0.0
290,291 + -1.2
290,291 + -0.8
290,291 + +0.5
290,291 + +0.3
290,291 + -0.7
290,292 - +0.7
290,292 - -0.9
290,292 - -0.8
290,292 - +0.8
290,292 - -0.0
290,292 - +1.2
290,292 - -0.2
290,292 - -0.6
290,292 - -0.7
290,292 - +0.1
290,292 - -0.5
290,292 - +0.3
290,292 - -1.5
290,292 - -0.3
290,292 - -1.1
290,532 - ABZR86_RS19190 0.15 -1.4
290,532 - ABZR86_RS19190 0.15 -0.8
290,606 + ABZR86_RS19190 0.17 +0.6
290,648 + ABZR86_RS19190 0.19 +0.4
290,648 + ABZR86_RS19190 0.19 +0.8
290,649 - ABZR86_RS19190 0.19 -0.5
290,649 - ABZR86_RS19190 0.19 +0.8
290,903 + ABZR86_RS19190 0.27 -1.3
290,903 + ABZR86_RS19190 0.27 -0.4
290,903 + ABZR86_RS19190 0.27 -0.1
290,903 + ABZR86_RS19190 0.27 -0.5
290,903 + ABZR86_RS19190 0.27 -0.6
290,903 + ABZR86_RS19190 0.27 -0.9
290,904 - ABZR86_RS19190 0.27 +2.1
290,904 - ABZR86_RS19190 0.27 -0.6

Or see this region's nucleotide sequence