Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18775 and ABZR86_RS18780 overlap by 4 nucleotides ABZR86_RS18780 and ABZR86_RS18785 are separated by 66 nucleotides ABZR86_RS18785 and ABZR86_RS18790 are separated by 251 nucleotides
ABZR86_RS18775: ABZR86_RS18775 - nucleotidyltransferase family protein, at 183,452 to 184,150
_RS18775
ABZR86_RS18780: ABZR86_RS18780 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 184,147 to 184,776
_RS18780
ABZR86_RS18785: ABZR86_RS18785 - class I SAM-dependent methyltransferase, at 184,843 to 185,676
_RS18785
ABZR86_RS18790: ABZR86_RS18790 - hypothetical protein, at 185,928 to 187,997
_RS18790
Position (kb) 184
185
186 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 183.894 kb on + strand, within ABZR86_RS18775 at 183.894 kb on + strand, within ABZR86_RS18775 at 183.894 kb on + strand, within ABZR86_RS18775 at 184.118 kb on + strand at 184.474 kb on + strand, within ABZR86_RS18780 at 184.474 kb on + strand, within ABZR86_RS18780 at 184.475 kb on - strand, within ABZR86_RS18780 at 184.477 kb on + strand, within ABZR86_RS18780 at 184.663 kb on + strand, within ABZR86_RS18780 at 184.850 kb on + strand at 184.850 kb on + strand at 184.850 kb on + strand at 184.850 kb on + strand at 184.851 kb on - strand at 184.851 kb on - strand at 184.851 kb on - strand at 184.965 kb on - strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.128 kb on + strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.129 kb on - strand, within ABZR86_RS18785 at 185.155 kb on + strand, within ABZR86_RS18785 at 185.156 kb on - strand, within ABZR86_RS18785 at 185.192 kb on - strand, within ABZR86_RS18785 at 185.354 kb on + strand, within ABZR86_RS18785 at 185.355 kb on - strand, within ABZR86_RS18785 at 185.469 kb on + strand, within ABZR86_RS18785 at 185.470 kb on - strand, within ABZR86_RS18785 at 185.510 kb on - strand, within ABZR86_RS18785 at 185.548 kb on + strand, within ABZR86_RS18785 at 185.548 kb on + strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.549 kb on - strand, within ABZR86_RS18785 at 185.645 kb on - strand at 185.645 kb on - strand at 185.674 kb on + strand at 185.675 kb on - strand at 185.729 kb on + strand at 185.729 kb on + strand at 185.730 kb on - strand at 185.730 kb on - strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.812 kb on + strand at 185.813 kb on - strand at 185.813 kb on - strand at 185.813 kb on - strand at 185.814 kb on + strand at 185.814 kb on + strand at 185.815 kb on - strand at 185.815 kb on - strand at 185.829 kb on + strand at 185.830 kb on - strand at 185.984 kb on + strand at 186.208 kb on + strand, within ABZR86_RS18790 at 186.209 kb on - strand, within ABZR86_RS18790 at 186.289 kb on + strand, within ABZR86_RS18790 at 186.309 kb on + strand, within ABZR86_RS18790 at 186.309 kb on + strand, within ABZR86_RS18790 at 186.310 kb on - strand, within ABZR86_RS18790 at 186.310 kb on - strand, within ABZR86_RS18790 at 186.310 kb on - strand, within ABZR86_RS18790 at 186.321 kb on + strand, within ABZR86_RS18790 at 186.322 kb on - strand, within ABZR86_RS18790 at 186.322 kb on - strand, within ABZR86_RS18790 at 186.379 kb on + strand, within ABZR86_RS18790 at 186.496 kb on - strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.552 kb on + strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.553 kb on - strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.618 kb on + strand, within ABZR86_RS18790 at 186.619 kb on - strand, within ABZR86_RS18790 at 186.619 kb on - strand, within ABZR86_RS18790 at 186.619 kb on - strand, within ABZR86_RS18790
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 183,894 + ABZR86_RS18775 0.63 +5.5 183,894 + ABZR86_RS18775 0.63 +5.0 183,894 + ABZR86_RS18775 0.63 +5.2 184,118 + +3.8 184,474 + ABZR86_RS18780 0.52 +6.3 184,474 + ABZR86_RS18780 0.52 +6.0 184,475 - ABZR86_RS18780 0.52 +6.2 184,477 + ABZR86_RS18780 0.52 +6.5 184,663 + ABZR86_RS18780 0.82 +7.6 184,850 + +0.1 184,850 + +0.3 184,850 + -0.3 184,850 + +0.0 184,851 - -0.9 184,851 - +0.6 184,851 - +0.6 184,965 - ABZR86_RS18785 0.15 -0.1 185,128 + ABZR86_RS18785 0.34 -0.4 185,128 + ABZR86_RS18785 0.34 +0.5 185,128 + ABZR86_RS18785 0.34 -0.7 185,128 + ABZR86_RS18785 0.34 +0.9 185,128 + ABZR86_RS18785 0.34 -0.4 185,128 + ABZR86_RS18785 0.34 +0.1 185,128 + ABZR86_RS18785 0.34 +0.8 185,128 + ABZR86_RS18785 0.34 +0.3 185,129 - ABZR86_RS18785 0.34 +0.0 185,129 - ABZR86_RS18785 0.34 +1.0 185,129 - ABZR86_RS18785 0.34 -0.5 185,129 - ABZR86_RS18785 0.34 -0.6 185,155 + ABZR86_RS18785 0.37 +0.6 185,156 - ABZR86_RS18785 0.38 +0.9 185,192 - ABZR86_RS18785 0.42 -0.1 185,354 + ABZR86_RS18785 0.61 +0.5 185,355 - ABZR86_RS18785 0.61 +0.3 185,469 + ABZR86_RS18785 0.75 +0.4 185,470 - ABZR86_RS18785 0.75 +0.8 185,510 - ABZR86_RS18785 0.80 -1.3 185,548 + ABZR86_RS18785 0.85 -0.5 185,548 + ABZR86_RS18785 0.85 +0.7 185,549 - ABZR86_RS18785 0.85 -0.1 185,549 - ABZR86_RS18785 0.85 +0.2 185,549 - ABZR86_RS18785 0.85 +0.6 185,549 - ABZR86_RS18785 0.85 +0.5 185,645 - +0.3 185,645 - +0.5 185,674 + -2.4 185,675 - +0.4 185,729 + -0.2 185,729 + +0.2 185,730 - -1.0 185,730 - +1.0 185,812 + -1.9 185,812 + +1.8 185,812 + -0.3 185,812 + -0.5 185,812 + +1.1 185,813 - -0.2 185,813 - +2.9 185,813 - -0.2 185,814 + -0.6 185,814 + -0.2 185,815 - -0.1 185,815 - +0.6 185,829 + -1.0 185,830 - +0.3 185,984 + -0.6 186,208 + ABZR86_RS18790 0.14 -0.3 186,209 - ABZR86_RS18790 0.14 +0.2 186,289 + ABZR86_RS18790 0.17 +0.0 186,309 + ABZR86_RS18790 0.18 -0.3 186,309 + ABZR86_RS18790 0.18 -1.3 186,310 - ABZR86_RS18790 0.18 -0.4 186,310 - ABZR86_RS18790 0.18 +0.2 186,310 - ABZR86_RS18790 0.18 +0.7 186,321 + ABZR86_RS18790 0.19 +0.2 186,322 - ABZR86_RS18790 0.19 -0.3 186,322 - ABZR86_RS18790 0.19 +0.1 186,379 + ABZR86_RS18790 0.22 -0.5 186,496 - ABZR86_RS18790 0.27 +0.0 186,552 + ABZR86_RS18790 0.30 +0.4 186,552 + ABZR86_RS18790 0.30 +0.2 186,552 + ABZR86_RS18790 0.30 -0.2 186,552 + ABZR86_RS18790 0.30 +0.8 186,552 + ABZR86_RS18790 0.30 +0.6 186,552 + ABZR86_RS18790 0.30 +0.3 186,552 + ABZR86_RS18790 0.30 +0.3 186,553 - ABZR86_RS18790 0.30 -0.0 186,553 - ABZR86_RS18790 0.30 +0.9 186,553 - ABZR86_RS18790 0.30 +0.1 186,553 - ABZR86_RS18790 0.30 +0.2 186,618 + ABZR86_RS18790 0.33 +0.2 186,618 + ABZR86_RS18790 0.33 -0.1 186,618 + ABZR86_RS18790 0.33 -0.3 186,618 + ABZR86_RS18790 0.33 +0.0 186,619 - ABZR86_RS18790 0.33 -1.1 186,619 - ABZR86_RS18790 0.33 +0.2 186,619 - ABZR86_RS18790 0.33 +0.9
Or see this region's nucleotide sequence