Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18715 and ABZR86_RS18720 overlap by 7 nucleotides ABZR86_RS18720 and ABZR86_RS18725 overlap by 4 nucleotides ABZR86_RS18725 and ABZR86_RS18730 overlap by 4 nucleotides
ABZR86_RS18715: ABZR86_RS18715 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 168,933 to 170,345
_RS18715
ABZR86_RS18720: ABZR86_RS18720 - dTDP-4-dehydrorhamnose reductase, at 170,339 to 171,283
_RS18720
ABZR86_RS18725: ABZR86_RS18725 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 171,280 to 171,837
_RS18725
ABZR86_RS18730: ABZR86_RS18730 - glucose-1-phosphate thymidylyltransferase RfbA, at 171,834 to 172,721
_RS18730
Position (kb) 170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 169.597 kb on + strand, within ABZR86_RS18715 at 169.597 kb on + strand, within ABZR86_RS18715 at 169.597 kb on + strand, within ABZR86_RS18715 at 169.598 kb on - strand, within ABZR86_RS18715 at 169.795 kb on + strand, within ABZR86_RS18715 at 169.795 kb on + strand, within ABZR86_RS18715 at 169.795 kb on + strand, within ABZR86_RS18715 at 169.846 kb on + strand, within ABZR86_RS18715 at 169.846 kb on + strand, within ABZR86_RS18715 at 169.846 kb on + strand, within ABZR86_RS18715 at 169.846 kb on + strand, within ABZR86_RS18715 at 169.846 kb on + strand, within ABZR86_RS18715 at 169.847 kb on - strand, within ABZR86_RS18715 at 169.847 kb on - strand, within ABZR86_RS18715 at 169.847 kb on - strand, within ABZR86_RS18715 at 169.882 kb on + strand, within ABZR86_RS18715 at 169.882 kb on + strand, within ABZR86_RS18715 at 169.883 kb on - strand, within ABZR86_RS18715 at 170.943 kb on + strand, within ABZR86_RS18720 at 170.943 kb on + strand, within ABZR86_RS18720 at 170.955 kb on + strand, within ABZR86_RS18720 at 171.069 kb on + strand, within ABZR86_RS18720 at 171.450 kb on - strand, within ABZR86_RS18725 at 171.450 kb on - strand, within ABZR86_RS18725 at 171.450 kb on - strand, within ABZR86_RS18725 at 171.465 kb on - strand, within ABZR86_RS18725 at 171.654 kb on - strand, within ABZR86_RS18725 at 171.749 kb on + strand, within ABZR86_RS18725 at 171.749 kb on + strand, within ABZR86_RS18725 at 171.750 kb on - strand, within ABZR86_RS18725 at 171.750 kb on - strand, within ABZR86_RS18725 at 171.871 kb on + strand at 171.872 kb on - strand at 171.872 kb on - strand at 172.006 kb on + strand, within ABZR86_RS18730 at 172.007 kb on - strand, within ABZR86_RS18730 at 172.192 kb on + strand, within ABZR86_RS18730
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 169,597 + ABZR86_RS18715 0.47 -1.1 169,597 + ABZR86_RS18715 0.47 -1.9 169,597 + ABZR86_RS18715 0.47 -1.8 169,598 - ABZR86_RS18715 0.47 -0.2 169,795 + ABZR86_RS18715 0.61 -2.4 169,795 + ABZR86_RS18715 0.61 -2.5 169,795 + ABZR86_RS18715 0.61 -1.9 169,846 + ABZR86_RS18715 0.65 -3.0 169,846 + ABZR86_RS18715 0.65 -4.2 169,846 + ABZR86_RS18715 0.65 -3.4 169,846 + ABZR86_RS18715 0.65 -4.0 169,846 + ABZR86_RS18715 0.65 -2.6 169,847 - ABZR86_RS18715 0.65 -2.5 169,847 - ABZR86_RS18715 0.65 -2.9 169,847 - ABZR86_RS18715 0.65 -1.6 169,882 + ABZR86_RS18715 0.67 -2.8 169,882 + ABZR86_RS18715 0.67 -0.7 169,883 - ABZR86_RS18715 0.67 +0.2 170,943 + ABZR86_RS18720 0.64 -1.3 170,943 + ABZR86_RS18720 0.64 -1.6 170,955 + ABZR86_RS18720 0.65 -1.5 171,069 + ABZR86_RS18720 0.77 -2.2 171,450 - ABZR86_RS18725 0.30 +0.6 171,450 - ABZR86_RS18725 0.30 +0.7 171,450 - ABZR86_RS18725 0.30 -0.1 171,465 - ABZR86_RS18725 0.33 +0.9 171,654 - ABZR86_RS18725 0.67 +0.2 171,749 + ABZR86_RS18725 0.84 -2.1 171,749 + ABZR86_RS18725 0.84 -1.2 171,750 - ABZR86_RS18725 0.84 +0.8 171,750 - ABZR86_RS18725 0.84 +1.3 171,871 + -0.4 171,872 - -0.9 171,872 - -1.7 172,006 + ABZR86_RS18730 0.19 -0.8 172,007 - ABZR86_RS18730 0.19 +0.1 172,192 + ABZR86_RS18730 0.40 -1.3
Or see this region's nucleotide sequence