Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18540 and ABZR86_RS18545 overlap by 4 nucleotides ABZR86_RS18545 and ABZR86_RS18550 overlap by 4 nucleotides
ABZR86_RS18540: ABZR86_RS18540 - glycosyltransferase, at 130,089 to 131,351
_RS18540
ABZR86_RS18545: ABZR86_RS18545 - hypothetical protein, at 131,348 to 132,655
_RS18545
ABZR86_RS18550: ABZR86_RS18550 - glycosyltransferase family 4 protein, at 132,652 to 133,737
_RS18550
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 131.289 kb on + strand at 131.289 kb on + strand at 131.289 kb on + strand at 131.289 kb on + strand at 131.290 kb on - strand at 131.290 kb on - strand at 131.347 kb on + strand at 131.582 kb on + strand, within ABZR86_RS18545 at 131.582 kb on + strand, within ABZR86_RS18545 at 131.583 kb on - strand, within ABZR86_RS18545 at 131.612 kb on + strand, within ABZR86_RS18545 at 131.612 kb on + strand, within ABZR86_RS18545 at 131.612 kb on + strand, within ABZR86_RS18545 at 131.612 kb on + strand, within ABZR86_RS18545 at 131.613 kb on - strand, within ABZR86_RS18545 at 131.613 kb on - strand, within ABZR86_RS18545 at 131.613 kb on - strand, within ABZR86_RS18545 at 131.613 kb on - strand, within ABZR86_RS18545 at 131.675 kb on + strand, within ABZR86_RS18545 at 131.676 kb on - strand, within ABZR86_RS18545 at 131.798 kb on + strand, within ABZR86_RS18545 at 131.799 kb on - strand, within ABZR86_RS18545 at 131.799 kb on - strand, within ABZR86_RS18545 at 131.799 kb on - strand, within ABZR86_RS18545 at 131.799 kb on - strand, within ABZR86_RS18545 at 131.804 kb on + strand, within ABZR86_RS18545 at 131.804 kb on + strand, within ABZR86_RS18545 at 131.804 kb on + strand, within ABZR86_RS18545 at 131.805 kb on - strand, within ABZR86_RS18545 at 131.805 kb on - strand, within ABZR86_RS18545 at 131.805 kb on - strand, within ABZR86_RS18545 at 131.805 kb on - strand, within ABZR86_RS18545 at 131.805 kb on - strand, within ABZR86_RS18545 at 131.810 kb on + strand, within ABZR86_RS18545 at 131.811 kb on - strand, within ABZR86_RS18545 at 131.906 kb on + strand, within ABZR86_RS18545 at 131.906 kb on + strand, within ABZR86_RS18545 at 132.191 kb on + strand, within ABZR86_RS18545 at 132.194 kb on - strand, within ABZR86_RS18545 at 132.219 kb on - strand, within ABZR86_RS18545 at 132.402 kb on - strand, within ABZR86_RS18545 at 132.402 kb on - strand, within ABZR86_RS18545 at 132.432 kb on - strand, within ABZR86_RS18545 at 132.432 kb on - strand, within ABZR86_RS18545 at 132.452 kb on + strand, within ABZR86_RS18545 at 132.453 kb on - strand, within ABZR86_RS18545 at 132.453 kb on - strand, within ABZR86_RS18545 at 132.453 kb on - strand, within ABZR86_RS18545 at 132.453 kb on - strand, within ABZR86_RS18545 at 132.453 kb on - strand, within ABZR86_RS18545 at 132.561 kb on - strand at 132.561 kb on - strand at 132.563 kb on - strand at 132.590 kb on + strand at 132.591 kb on - strand at 132.591 kb on - strand at 132.728 kb on - strand at 132.790 kb on + strand, within ABZR86_RS18550 at 132.790 kb on + strand, within ABZR86_RS18550 at 132.791 kb on - strand, within ABZR86_RS18550 at 132.791 kb on - strand, within ABZR86_RS18550 at 132.805 kb on + strand, within ABZR86_RS18550 at 132.832 kb on + strand, within ABZR86_RS18550 at 132.833 kb on - strand, within ABZR86_RS18550 at 132.833 kb on - strand, within ABZR86_RS18550 at 132.833 kb on - strand, within ABZR86_RS18550 at 132.850 kb on + strand, within ABZR86_RS18550 at 132.926 kb on - strand, within ABZR86_RS18550 at 132.973 kb on + strand, within ABZR86_RS18550 at 132.985 kb on + strand, within ABZR86_RS18550 at 132.985 kb on + strand, within ABZR86_RS18550 at 133.009 kb on + strand, within ABZR86_RS18550 at 133.010 kb on - strand, within ABZR86_RS18550 at 133.010 kb on - strand, within ABZR86_RS18550 at 133.010 kb on - strand, within ABZR86_RS18550 at 133.035 kb on - strand, within ABZR86_RS18550 at 133.035 kb on - strand, within ABZR86_RS18550 at 133.035 kb on - strand, within ABZR86_RS18550 at 133.035 kb on - strand, within ABZR86_RS18550 at 133.106 kb on - strand, within ABZR86_RS18550 at 133.180 kb on + strand, within ABZR86_RS18550 at 133.252 kb on + strand, within ABZR86_RS18550 at 133.253 kb on - strand, within ABZR86_RS18550 at 133.472 kb on - strand, within ABZR86_RS18550 at 133.486 kb on + strand, within ABZR86_RS18550 at 133.487 kb on - strand, within ABZR86_RS18550 at 133.487 kb on - strand, within ABZR86_RS18550
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 131,289 + +0.4 131,289 + +0.3 131,289 + +0.7 131,289 + +0.5 131,290 - -0.2 131,290 - -1.3 131,347 + +0.4 131,582 + ABZR86_RS18545 0.18 -1.1 131,582 + ABZR86_RS18545 0.18 -0.8 131,583 - ABZR86_RS18545 0.18 -0.5 131,612 + ABZR86_RS18545 0.20 -3.0 131,612 + ABZR86_RS18545 0.20 -0.4 131,612 + ABZR86_RS18545 0.20 +0.5 131,612 + ABZR86_RS18545 0.20 -1.1 131,613 - ABZR86_RS18545 0.20 +0.8 131,613 - ABZR86_RS18545 0.20 -0.9 131,613 - ABZR86_RS18545 0.20 -0.0 131,613 - ABZR86_RS18545 0.20 +0.2 131,675 + ABZR86_RS18545 0.25 -0.4 131,676 - ABZR86_RS18545 0.25 +0.5 131,798 + ABZR86_RS18545 0.34 +1.3 131,799 - ABZR86_RS18545 0.34 -0.6 131,799 - ABZR86_RS18545 0.34 -0.0 131,799 - ABZR86_RS18545 0.34 -2.3 131,799 - ABZR86_RS18545 0.34 -1.3 131,804 + ABZR86_RS18545 0.35 -0.8 131,804 + ABZR86_RS18545 0.35 -1.4 131,804 + ABZR86_RS18545 0.35 +0.4 131,805 - ABZR86_RS18545 0.35 -1.4 131,805 - ABZR86_RS18545 0.35 -1.1 131,805 - ABZR86_RS18545 0.35 +0.1 131,805 - ABZR86_RS18545 0.35 -0.4 131,805 - ABZR86_RS18545 0.35 -1.0 131,810 + ABZR86_RS18545 0.35 -3.1 131,811 - ABZR86_RS18545 0.35 -2.1 131,906 + ABZR86_RS18545 0.43 -2.0 131,906 + ABZR86_RS18545 0.43 -1.3 132,191 + ABZR86_RS18545 0.64 -0.8 132,194 - ABZR86_RS18545 0.65 -0.7 132,219 - ABZR86_RS18545 0.67 -1.2 132,402 - ABZR86_RS18545 0.81 -0.5 132,402 - ABZR86_RS18545 0.81 -0.9 132,432 - ABZR86_RS18545 0.83 -0.1 132,432 - ABZR86_RS18545 0.83 +0.7 132,452 + ABZR86_RS18545 0.84 -1.3 132,453 - ABZR86_RS18545 0.84 -0.3 132,453 - ABZR86_RS18545 0.84 -1.7 132,453 - ABZR86_RS18545 0.84 -0.8 132,453 - ABZR86_RS18545 0.84 -0.7 132,453 - ABZR86_RS18545 0.84 +0.2 132,561 - -0.4 132,561 - -1.8 132,563 - -0.5 132,590 + -0.1 132,591 - -0.9 132,591 - -1.2 132,728 - -0.3 132,790 + ABZR86_RS18550 0.13 -0.4 132,790 + ABZR86_RS18550 0.13 -0.0 132,791 - ABZR86_RS18550 0.13 +0.3 132,791 - ABZR86_RS18550 0.13 -0.0 132,805 + ABZR86_RS18550 0.14 -1.6 132,832 + ABZR86_RS18550 0.17 -0.4 132,833 - ABZR86_RS18550 0.17 -1.1 132,833 - ABZR86_RS18550 0.17 +0.2 132,833 - ABZR86_RS18550 0.17 +0.1 132,850 + ABZR86_RS18550 0.18 +0.5 132,926 - ABZR86_RS18550 0.25 +0.5 132,973 + ABZR86_RS18550 0.30 -0.1 132,985 + ABZR86_RS18550 0.31 +1.4 132,985 + ABZR86_RS18550 0.31 +0.5 133,009 + ABZR86_RS18550 0.33 -0.7 133,010 - ABZR86_RS18550 0.33 +1.1 133,010 - ABZR86_RS18550 0.33 -1.2 133,010 - ABZR86_RS18550 0.33 +0.3 133,035 - ABZR86_RS18550 0.35 +0.2 133,035 - ABZR86_RS18550 0.35 +0.7 133,035 - ABZR86_RS18550 0.35 +0.6 133,035 - ABZR86_RS18550 0.35 +1.2 133,106 - ABZR86_RS18550 0.42 -0.4 133,180 + ABZR86_RS18550 0.49 +1.3 133,252 + ABZR86_RS18550 0.55 +0.2 133,253 - ABZR86_RS18550 0.55 +0.7 133,472 - ABZR86_RS18550 0.76 -0.7 133,486 + ABZR86_RS18550 0.77 -1.1 133,487 - ABZR86_RS18550 0.77 +0.3 133,487 - ABZR86_RS18550 0.77 +0.8
Or see this region's nucleotide sequence