Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18450

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18445 and ABZR86_RS18450 are separated by 3 nucleotidesABZR86_RS18450 and ABZR86_RS18455 are separated by 218 nucleotides ABZR86_RS18445: ABZR86_RS18445 - alpha-ketoacid dehydrogenase subunit beta, at 108,228 to 109,208 _RS18445 ABZR86_RS18450: ABZR86_RS18450 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 109,212 to 110,297 _RS18450 ABZR86_RS18455: ABZR86_RS18455 - tryptophan 2,3-dioxygenase family protein, at 110,516 to 111,364 _RS18455 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 108.229 kb on + strandat 108.230 kb on - strandat 108.230 kb on - strandat 108.286 kb on + strandat 108.947 kb on - strand, within ABZR86_RS18445at 109.190 kb on + strandat 109.213 kb on + strandat 109.214 kb on - strandat 109.214 kb on - strandat 109.214 kb on - strandat 109.214 kb on - strandat 109.288 kb on + strandat 109.525 kb on + strand, within ABZR86_RS18450at 109.525 kb on + strand, within ABZR86_RS18450at 109.526 kb on - strand, within ABZR86_RS18450at 109.966 kb on + strand, within ABZR86_RS18450at 109.966 kb on + strand, within ABZR86_RS18450at 109.967 kb on - strand, within ABZR86_RS18450at 109.972 kb on + strand, within ABZR86_RS18450at 109.972 kb on + strand, within ABZR86_RS18450at 109.972 kb on + strand, within ABZR86_RS18450at 109.973 kb on - strand, within ABZR86_RS18450at 109.973 kb on - strand, within ABZR86_RS18450at 109.973 kb on - strand, within ABZR86_RS18450at 110.023 kb on + strand, within ABZR86_RS18450at 110.024 kb on - strand, within ABZR86_RS18450at 110.104 kb on + strand, within ABZR86_RS18450at 110.266 kb on + strandat 110.383 kb on - strandat 110.473 kb on + strandat 110.483 kb on + strandat 110.483 kb on + strandat 110.483 kb on + strandat 110.483 kb on + strandat 110.483 kb on + strandat 110.484 kb on - strandat 110.484 kb on - strandat 110.486 kb on + strandat 110.486 kb on + strandat 110.486 kb on + strandat 110.486 kb on + strandat 110.486 kb on + strandat 110.579 kb on + strandat 110.588 kb on + strandat 110.804 kb on + strand, within ABZR86_RS18455at 110.804 kb on + strand, within ABZR86_RS18455at 110.805 kb on - strand, within ABZR86_RS18455at 110.805 kb on - strand, within ABZR86_RS18455at 110.847 kb on - strand, within ABZR86_RS18455at 110.847 kb on - strand, within ABZR86_RS18455at 111.015 kb on - strand, within ABZR86_RS18455at 111.032 kb on + strand, within ABZR86_RS18455at 111.032 kb on + strand, within ABZR86_RS18455at 111.033 kb on - strand, within ABZR86_RS18455at 111.033 kb on - strand, within ABZR86_RS18455at 111.033 kb on - strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.138 kb on - strand, within ABZR86_RS18455at 111.167 kb on + strand, within ABZR86_RS18455at 111.167 kb on + strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.230 kb on - strand, within ABZR86_RS18455at 111.230 kb on - strand, within ABZR86_RS18455at 111.230 kb on - strand, within ABZR86_RS18455

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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108,229 + +0.1
108,230 - +0.5
108,230 - +0.8
108,286 + +0.0
108,947 - ABZR86_RS18445 0.73 +0.2
109,190 + +0.0
109,213 + -1.0
109,214 - +0.7
109,214 - -0.0
109,214 - +1.7
109,214 - +0.0
109,288 + -1.3
109,525 + ABZR86_RS18450 0.29 -0.2
109,525 + ABZR86_RS18450 0.29 -1.8
109,526 - ABZR86_RS18450 0.29 -0.4
109,966 + ABZR86_RS18450 0.69 +0.4
109,966 + ABZR86_RS18450 0.69 -1.2
109,967 - ABZR86_RS18450 0.70 -0.3
109,972 + ABZR86_RS18450 0.70 -0.1
109,972 + ABZR86_RS18450 0.70 +1.2
109,972 + ABZR86_RS18450 0.70 -2.1
109,973 - ABZR86_RS18450 0.70 +0.4
109,973 - ABZR86_RS18450 0.70 +0.4
109,973 - ABZR86_RS18450 0.70 -1.6
110,023 + ABZR86_RS18450 0.75 -1.0
110,024 - ABZR86_RS18450 0.75 -0.7
110,104 + ABZR86_RS18450 0.82 -0.6
110,266 + -0.3
110,383 - -0.0
110,473 + -0.2
110,483 + -0.3
110,483 + +0.7
110,483 + +0.2
110,483 + +0.5
110,483 + -0.2
110,484 - +0.7
110,484 - +0.3
110,486 + -0.3
110,486 + -0.1
110,486 + +0.7
110,486 + +0.4
110,486 + +0.6
110,579 + +0.1
110,588 + -0.0
110,804 + ABZR86_RS18455 0.34 +0.8
110,804 + ABZR86_RS18455 0.34 +1.1
110,805 - ABZR86_RS18455 0.34 +0.7
110,805 - ABZR86_RS18455 0.34 -1.3
110,847 - ABZR86_RS18455 0.39 +0.1
110,847 - ABZR86_RS18455 0.39 +0.0
111,015 - ABZR86_RS18455 0.59 +0.5
111,032 + ABZR86_RS18455 0.61 +0.5
111,032 + ABZR86_RS18455 0.61 -0.4
111,033 - ABZR86_RS18455 0.61 +0.4
111,033 - ABZR86_RS18455 0.61 -0.0
111,033 - ABZR86_RS18455 0.61 +0.4
111,137 + ABZR86_RS18455 0.73 +0.3
111,137 + ABZR86_RS18455 0.73 -1.3
111,137 + ABZR86_RS18455 0.73 +0.7
111,137 + ABZR86_RS18455 0.73 +1.6
111,138 - ABZR86_RS18455 0.73 -0.1
111,167 + ABZR86_RS18455 0.77 +1.3
111,167 + ABZR86_RS18455 0.77 +0.5
111,168 - ABZR86_RS18455 0.77 +2.3
111,168 - ABZR86_RS18455 0.77 -0.3
111,168 - ABZR86_RS18455 0.77 -0.3
111,168 - ABZR86_RS18455 0.77 +0.1
111,170 + ABZR86_RS18455 0.77 -0.1
111,170 + ABZR86_RS18455 0.77 +0.6
111,170 + ABZR86_RS18455 0.77 +0.3
111,170 + ABZR86_RS18455 0.77 -0.0
111,170 + ABZR86_RS18455 0.77 +0.0
111,170 + ABZR86_RS18455 0.77 -0.0
111,170 + ABZR86_RS18455 0.77 +0.2
111,170 + ABZR86_RS18455 0.77 +0.1
111,171 - ABZR86_RS18455 0.77 -0.1
111,171 - ABZR86_RS18455 0.77 -0.2
111,171 - ABZR86_RS18455 0.77 +0.4
111,171 - ABZR86_RS18455 0.77 -0.2
111,171 - ABZR86_RS18455 0.77 -0.7
111,171 - ABZR86_RS18455 0.77 -0.2
111,171 - ABZR86_RS18455 0.77 +0.6
111,171 - ABZR86_RS18455 0.77 +0.8
111,171 - ABZR86_RS18455 0.77 -0.6
111,171 - ABZR86_RS18455 0.77 +0.5
111,171 - ABZR86_RS18455 0.77 +1.0
111,229 + ABZR86_RS18455 0.84 +0.8
111,229 + ABZR86_RS18455 0.84 -0.5
111,229 + ABZR86_RS18455 0.84 +0.3
111,229 + ABZR86_RS18455 0.84 +0.6
111,230 - ABZR86_RS18455 0.84 +0.1
111,230 - ABZR86_RS18455 0.84 +0.2
111,230 - ABZR86_RS18455 0.84 +0.9

Or see this region's nucleotide sequence