Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18240 and ABZR86_RS18245 are separated by 39 nucleotides ABZR86_RS18245 and ABZR86_RS18250 are separated by 158 nucleotides ABZR86_RS18250 and ABZR86_RS18255 are separated by 166 nucleotides
ABZR86_RS18240: ABZR86_RS18240 - M23 family metallopeptidase, at 65,126 to 66,292
_RS18240
ABZR86_RS18245: ABZR86_RS18245 - hypothetical protein, at 66,332 to 66,562
_RS18245
ABZR86_RS18250: ABZR86_RS18250 - TetR/AcrR family transcriptional regulator, at 66,721 to 67,332
_RS18250
ABZR86_RS18255: ABZR86_RS18255 - hypothetical protein, at 67,499 to 68,875
_RS18255
Position (kb) 66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.356 kb on + strand, within ABZR86_RS18240 at 65.356 kb on + strand, within ABZR86_RS18240 at 65.356 kb on + strand, within ABZR86_RS18240 at 65.356 kb on + strand, within ABZR86_RS18240 at 65.721 kb on - strand, within ABZR86_RS18240 at 65.780 kb on + strand, within ABZR86_RS18240 at 65.798 kb on + strand, within ABZR86_RS18240 at 65.798 kb on + strand, within ABZR86_RS18240 at 65.799 kb on - strand, within ABZR86_RS18240 at 65.850 kb on + strand, within ABZR86_RS18240 at 65.851 kb on - strand, within ABZR86_RS18240 at 65.851 kb on - strand, within ABZR86_RS18240 at 65.945 kb on + strand, within ABZR86_RS18240 at 65.946 kb on - strand, within ABZR86_RS18240 at 65.946 kb on - strand, within ABZR86_RS18240 at 65.946 kb on - strand, within ABZR86_RS18240 at 65.984 kb on + strand, within ABZR86_RS18240 at 65.984 kb on + strand, within ABZR86_RS18240 at 65.985 kb on - strand, within ABZR86_RS18240 at 65.985 kb on - strand, within ABZR86_RS18240 at 65.985 kb on - strand, within ABZR86_RS18240 at 65.985 kb on - strand, within ABZR86_RS18240 at 66.105 kb on + strand, within ABZR86_RS18240 at 66.106 kb on - strand, within ABZR86_RS18240 at 66.106 kb on - strand, within ABZR86_RS18240 at 66.146 kb on + strand, within ABZR86_RS18240 at 66.146 kb on + strand, within ABZR86_RS18240 at 66.146 kb on + strand, within ABZR86_RS18240 at 66.146 kb on + strand, within ABZR86_RS18240 at 66.290 kb on + strand at 66.384 kb on + strand, within ABZR86_RS18245 at 66.384 kb on + strand, within ABZR86_RS18245 at 66.394 kb on + strand, within ABZR86_RS18245 at 66.554 kb on + strand at 66.554 kb on + strand at 66.554 kb on + strand at 66.554 kb on + strand at 66.554 kb on + strand at 66.554 kb on + strand at 66.555 kb on - strand at 66.555 kb on - strand at 66.555 kb on - strand at 66.555 kb on - strand at 66.555 kb on - strand at 66.555 kb on - strand at 66.641 kb on + strand at 66.641 kb on + strand at 66.642 kb on - strand at 66.675 kb on + strand at 66.675 kb on + strand at 66.676 kb on - strand at 66.739 kb on + strand at 66.740 kb on - strand at 66.788 kb on + strand, within ABZR86_RS18250 at 66.889 kb on + strand, within ABZR86_RS18250 at 66.889 kb on + strand, within ABZR86_RS18250 at 66.889 kb on + strand, within ABZR86_RS18250 at 66.890 kb on - strand, within ABZR86_RS18250 at 66.890 kb on - strand, within ABZR86_RS18250 at 67.065 kb on + strand, within ABZR86_RS18250 at 67.069 kb on + strand, within ABZR86_RS18250 at 67.069 kb on + strand, within ABZR86_RS18250 at 67.070 kb on - strand, within ABZR86_RS18250 at 67.167 kb on + strand, within ABZR86_RS18250 at 67.168 kb on - strand, within ABZR86_RS18250 at 67.407 kb on + strand at 67.407 kb on + strand at 67.407 kb on + strand at 67.407 kb on + strand at 67.407 kb on + strand at 67.416 kb on + strand at 67.418 kb on + strand at 67.419 kb on - strand at 67.419 kb on - strand at 67.419 kb on - strand at 67.499 kb on - strand at 67.521 kb on + strand at 67.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 65,356 + ABZR86_RS18240 0.20 -0.1 65,356 + ABZR86_RS18240 0.20 -2.8 65,356 + ABZR86_RS18240 0.20 -0.2 65,356 + ABZR86_RS18240 0.20 -1.1 65,721 - ABZR86_RS18240 0.51 -0.4 65,780 + ABZR86_RS18240 0.56 +1.1 65,798 + ABZR86_RS18240 0.58 +0.1 65,798 + ABZR86_RS18240 0.58 +0.2 65,799 - ABZR86_RS18240 0.58 -0.6 65,850 + ABZR86_RS18240 0.62 +2.1 65,851 - ABZR86_RS18240 0.62 +0.1 65,851 - ABZR86_RS18240 0.62 -0.3 65,945 + ABZR86_RS18240 0.70 -0.0 65,946 - ABZR86_RS18240 0.70 +0.9 65,946 - ABZR86_RS18240 0.70 -0.3 65,946 - ABZR86_RS18240 0.70 -0.4 65,984 + ABZR86_RS18240 0.74 -0.6 65,984 + ABZR86_RS18240 0.74 -2.0 65,985 - ABZR86_RS18240 0.74 -0.1 65,985 - ABZR86_RS18240 0.74 +0.2 65,985 - ABZR86_RS18240 0.74 +0.9 65,985 - ABZR86_RS18240 0.74 +0.3 66,105 + ABZR86_RS18240 0.84 -0.2 66,106 - ABZR86_RS18240 0.84 +1.5 66,106 - ABZR86_RS18240 0.84 +1.0 66,146 + ABZR86_RS18240 0.87 -0.5 66,146 + ABZR86_RS18240 0.87 +0.0 66,146 + ABZR86_RS18240 0.87 +0.4 66,146 + ABZR86_RS18240 0.87 -0.8 66,290 + -0.6 66,384 + ABZR86_RS18245 0.23 -1.5 66,384 + ABZR86_RS18245 0.23 -1.2 66,394 + ABZR86_RS18245 0.27 +0.1 66,554 + -1.2 66,554 + -0.5 66,554 + +0.2 66,554 + -0.5 66,554 + -0.7 66,554 + -0.5 66,555 - -0.5 66,555 - -0.1 66,555 - +0.3 66,555 - -1.0 66,555 - +0.1 66,555 - -1.2 66,641 + -0.6 66,641 + -1.2 66,642 - +0.6 66,675 + -0.6 66,675 + +0.3 66,676 - -0.3 66,739 + -0.3 66,740 - +0.4 66,788 + ABZR86_RS18250 0.11 +1.0 66,889 + ABZR86_RS18250 0.27 -0.3 66,889 + ABZR86_RS18250 0.27 -0.2 66,889 + ABZR86_RS18250 0.27 +0.9 66,890 - ABZR86_RS18250 0.28 -0.7 66,890 - ABZR86_RS18250 0.28 +0.5 67,065 + ABZR86_RS18250 0.56 -0.4 67,069 + ABZR86_RS18250 0.57 +0.2 67,069 + ABZR86_RS18250 0.57 -0.1 67,070 - ABZR86_RS18250 0.57 -1.6 67,167 + ABZR86_RS18250 0.73 +0.1 67,168 - ABZR86_RS18250 0.73 -0.3 67,407 + -0.1 67,407 + +0.5 67,407 + -0.3 67,407 + +0.6 67,407 + -0.2 67,416 + -0.6 67,418 + +0.1 67,419 - -0.2 67,419 - +0.0 67,419 - +0.7 67,499 - +0.6 67,521 + -1.0 67,555 - -0.0
Or see this region's nucleotide sequence