Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17875

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17870 and ABZR86_RS17875 are separated by 142 nucleotidesABZR86_RS17875 and ABZR86_RS17880 are separated by 59 nucleotidesABZR86_RS17880 and ABZR86_RS17885 are separated by 40 nucleotides ABZR86_RS17870: ABZR86_RS17870 - LysR family transcriptional regulator, at 4,029,907 to 4,030,773 _RS17870 ABZR86_RS17875: ABZR86_RS17875 - hypothetical protein, at 4,030,916 to 4,031,515 _RS17875 ABZR86_RS17880: ABZR86_RS17880 - hypothetical protein, at 4,031,575 to 4,032,057 _RS17880 ABZR86_RS17885: ABZR86_RS17885 - hypothetical protein, at 4,032,098 to 4,032,610 _RS17885 Position (kb) 4030 4031 4032Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4030.057 kb on + strand, within ABZR86_RS17870at 4030.112 kb on - strand, within ABZR86_RS17870at 4030.569 kb on - strand, within ABZR86_RS17870at 4030.569 kb on - strand, within ABZR86_RS17870at 4030.771 kb on + strandat 4030.772 kb on - strandat 4030.786 kb on + strandat 4030.787 kb on - strandat 4030.874 kb on + strandat 4030.874 kb on + strandat 4030.875 kb on - strandat 4030.884 kb on + strandat 4030.884 kb on + strandat 4030.936 kb on - strandat 4030.936 kb on - strandat 4030.936 kb on - strandat 4031.136 kb on - strand, within ABZR86_RS17875at 4031.435 kb on - strand, within ABZR86_RS17875at 4031.483 kb on + strandat 4031.483 kb on + strandat 4031.483 kb on + strandat 4031.487 kb on + strandat 4031.487 kb on + strandat 4031.488 kb on - strandat 4031.488 kb on - strandat 4031.953 kb on + strand, within ABZR86_RS17880at 4031.953 kb on + strand, within ABZR86_RS17880at 4031.998 kb on + strand, within ABZR86_RS17880at 4032.030 kb on + strandat 4032.030 kb on + strandat 4032.031 kb on - strandat 4032.037 kb on + strandat 4032.037 kb on + strandat 4032.122 kb on - strandat 4032.164 kb on + strand, within ABZR86_RS17885at 4032.165 kb on - strand, within ABZR86_RS17885at 4032.165 kb on - strand, within ABZR86_RS17885

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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4,030,057 + ABZR86_RS17870 0.17 -0.2
4,030,112 - ABZR86_RS17870 0.24 +0.1
4,030,569 - ABZR86_RS17870 0.76 -0.2
4,030,569 - ABZR86_RS17870 0.76 +0.2
4,030,771 + -1.4
4,030,772 - +0.0
4,030,786 + -0.8
4,030,787 - -3.4
4,030,874 + -0.5
4,030,874 + +0.2
4,030,875 - +0.1
4,030,884 + -0.7
4,030,884 + -0.7
4,030,936 - -0.3
4,030,936 - +0.4
4,030,936 - +0.0
4,031,136 - ABZR86_RS17875 0.37 -0.6
4,031,435 - ABZR86_RS17875 0.86 -1.3
4,031,483 + +0.1
4,031,483 + -0.7
4,031,483 + -1.0
4,031,487 + -1.9
4,031,487 + +0.0
4,031,488 - +0.5
4,031,488 - -0.4
4,031,953 + ABZR86_RS17880 0.78 -0.7
4,031,953 + ABZR86_RS17880 0.78 +0.8
4,031,998 + ABZR86_RS17880 0.88 +0.3
4,032,030 + +0.3
4,032,030 + -0.4
4,032,031 - -0.1
4,032,037 + +2.2
4,032,037 + -0.7
4,032,122 - -0.0
4,032,164 + ABZR86_RS17885 0.13 +0.6
4,032,165 - ABZR86_RS17885 0.13 +0.3
4,032,165 - ABZR86_RS17885 0.13 -0.5

Or see this region's nucleotide sequence