Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14260

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14250 and ABZR86_RS14255 are separated by 5 nucleotidesABZR86_RS14255 and ABZR86_RS14260 are separated by 3 nucleotidesABZR86_RS14260 and ABZR86_RS14265 overlap by 4 nucleotides ABZR86_RS14250: ABZR86_RS14250 - PhzF family phenazine biosynthesis isomerase, at 3,172,022 to 3,172,870 _RS14250 ABZR86_RS14255: ABZR86_RS14255 - pyridoxal 5'-phosphate synthase, at 3,172,876 to 3,173,505 _RS14255 ABZR86_RS14260: ABZR86_RS14260 - hypothetical protein, at 3,173,509 to 3,173,874 _RS14260 ABZR86_RS14265: ABZR86_RS14265 - anthranilate synthase family protein, at 3,173,871 to 3,175,730 _RS14265 Position (kb) 3173 3174Strain fitness (log2 ratio) -2 -1 0 1at 3172.863 kb on + strandat 3172.863 kb on + strandat 3172.864 kb on - strandat 3172.864 kb on - strandat 3172.864 kb on - strandat 3172.983 kb on - strand, within ABZR86_RS14255at 3173.216 kb on + strand, within ABZR86_RS14255at 3173.216 kb on + strand, within ABZR86_RS14255at 3173.495 kb on + strandat 3173.808 kb on - strand, within ABZR86_RS14260at 3173.808 kb on - strand, within ABZR86_RS14260at 3173.808 kb on - strand, within ABZR86_RS14260at 3173.859 kb on + strandat 3173.865 kb on + strandat 3173.866 kb on - strandat 3174.079 kb on + strand, within ABZR86_RS14265at 3174.080 kb on - strand, within ABZR86_RS14265

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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3,172,863 + -0.6
3,172,863 + +0.1
3,172,864 - -0.2
3,172,864 - -0.3
3,172,864 - +0.1
3,172,983 - ABZR86_RS14255 0.17 +0.3
3,173,216 + ABZR86_RS14255 0.54 -0.0
3,173,216 + ABZR86_RS14255 0.54 +1.2
3,173,495 + -0.0
3,173,808 - ABZR86_RS14260 0.82 -0.5
3,173,808 - ABZR86_RS14260 0.82 -1.1
3,173,808 - ABZR86_RS14260 0.82 -1.7
3,173,859 + +0.2
3,173,865 + +0.2
3,173,866 - -0.1
3,174,079 + ABZR86_RS14265 0.11 +0.8
3,174,080 - ABZR86_RS14265 0.11 -2.2

Or see this region's nucleotide sequence