Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11890 and ABZR86_RS11895 overlap by 4 nucleotides ABZR86_RS11895 and ABZR86_RS11900 are separated by 92 nucleotides ABZR86_RS11900 and ABZR86_RS11905 are separated by 2 nucleotides ABZR86_RS11905 and ABZR86_RS11910 are separated by 2 nucleotides
ABZR86_RS11890: ABZR86_RS11890 - guanylate kinase, at 2,665,792 to 2,666,445
_RS11890
ABZR86_RS11895: ABZR86_RS11895 - YicC/YloC family endoribonuclease, at 2,666,442 to 2,667,302
_RS11895
ABZR86_RS11900: ABZR86_RS11900 - ribonuclease PH, at 2,667,395 to 2,668,126
_RS11900
ABZR86_RS11905: ABZR86_RS11905 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,668,129 to 2,668,737
_RS11905
ABZR86_RS11910: ABZR86_RS11910 - radical SAM family heme chaperone HemW, at 2,668,740 to 2,669,906
_RS11910
Position (kb)
2667
2668
2669 Strain fitness (log2 ratio)
-2
-1
0
1 at 2666.793 kb on - strand, within ABZR86_RS11895 at 2667.315 kb on - strand at 2667.315 kb on - strand at 2667.315 kb on - strand at 2667.351 kb on + strand at 2667.351 kb on + strand at 2667.352 kb on - strand at 2667.806 kb on + strand, within ABZR86_RS11900 at 2667.806 kb on + strand, within ABZR86_RS11900 at 2667.806 kb on + strand, within ABZR86_RS11900 at 2667.905 kb on + strand, within ABZR86_RS11900 at 2667.905 kb on + strand, within ABZR86_RS11900 at 2667.906 kb on - strand, within ABZR86_RS11900 at 2667.906 kb on - strand, within ABZR86_RS11900 at 2667.906 kb on - strand, within ABZR86_RS11900 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.260 kb on + strand, within ABZR86_RS11905 at 2668.261 kb on - strand, within ABZR86_RS11905 at 2668.390 kb on + strand, within ABZR86_RS11905 at 2668.390 kb on + strand, within ABZR86_RS11905 at 2668.594 kb on + strand, within ABZR86_RS11905 at 2668.771 kb on - strand at 2668.806 kb on + strand at 2668.852 kb on - strand at 2668.860 kb on + strand, within ABZR86_RS11910 at 2668.860 kb on + strand, within ABZR86_RS11910 at 2668.861 kb on - strand, within ABZR86_RS11910 at 2668.861 kb on - strand, within ABZR86_RS11910 at 2668.861 kb on - strand, within ABZR86_RS11910 at 2669.094 kb on + strand, within ABZR86_RS11910 at 2669.095 kb on - strand, within ABZR86_RS11910
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 2,666,793 - ABZR86_RS11895 0.41 +0.0 2,667,315 - -1.8 2,667,315 - +1.1 2,667,315 - +0.4 2,667,351 + -0.3 2,667,351 + +0.1 2,667,352 - -0.6 2,667,806 + ABZR86_RS11900 0.56 -2.0 2,667,806 + ABZR86_RS11900 0.56 -1.4 2,667,806 + ABZR86_RS11900 0.56 -1.9 2,667,905 + ABZR86_RS11900 0.70 -2.1 2,667,905 + ABZR86_RS11900 0.70 -2.2 2,667,906 - ABZR86_RS11900 0.70 -0.6 2,667,906 - ABZR86_RS11900 0.70 -1.5 2,667,906 - ABZR86_RS11900 0.70 -0.3 2,668,260 + ABZR86_RS11905 0.22 -1.1 2,668,260 + ABZR86_RS11905 0.22 +0.0 2,668,260 + ABZR86_RS11905 0.22 +0.2 2,668,260 + ABZR86_RS11905 0.22 +0.1 2,668,260 + ABZR86_RS11905 0.22 -0.2 2,668,260 + ABZR86_RS11905 0.22 -1.1 2,668,260 + ABZR86_RS11905 0.22 +0.0 2,668,261 - ABZR86_RS11905 0.22 +0.1 2,668,390 + ABZR86_RS11905 0.43 +1.3 2,668,390 + ABZR86_RS11905 0.43 -0.3 2,668,594 + ABZR86_RS11905 0.76 -0.8 2,668,771 - +1.2 2,668,806 + -1.0 2,668,852 - +0.6 2,668,860 + ABZR86_RS11910 0.10 -0.0 2,668,860 + ABZR86_RS11910 0.10 -0.3 2,668,861 - ABZR86_RS11910 0.10 +0.0 2,668,861 - ABZR86_RS11910 0.10 -0.0 2,668,861 - ABZR86_RS11910 0.10 +0.2 2,669,094 + ABZR86_RS11910 0.30 -0.5 2,669,095 - ABZR86_RS11910 0.30 +0.5
Or see this region's nucleotide sequence