Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11900

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11890 and ABZR86_RS11895 overlap by 4 nucleotidesABZR86_RS11895 and ABZR86_RS11900 are separated by 92 nucleotidesABZR86_RS11900 and ABZR86_RS11905 are separated by 2 nucleotidesABZR86_RS11905 and ABZR86_RS11910 are separated by 2 nucleotides ABZR86_RS11890: ABZR86_RS11890 - guanylate kinase, at 2,665,792 to 2,666,445 _RS11890 ABZR86_RS11895: ABZR86_RS11895 - YicC/YloC family endoribonuclease, at 2,666,442 to 2,667,302 _RS11895 ABZR86_RS11900: ABZR86_RS11900 - ribonuclease PH, at 2,667,395 to 2,668,126 _RS11900 ABZR86_RS11905: ABZR86_RS11905 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,668,129 to 2,668,737 _RS11905 ABZR86_RS11910: ABZR86_RS11910 - radical SAM family heme chaperone HemW, at 2,668,740 to 2,669,906 _RS11910 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -2 -1 0 1at 2666.793 kb on - strand, within ABZR86_RS11895at 2667.315 kb on - strandat 2667.315 kb on - strandat 2667.315 kb on - strandat 2667.351 kb on + strandat 2667.351 kb on + strandat 2667.352 kb on - strandat 2667.806 kb on + strand, within ABZR86_RS11900at 2667.806 kb on + strand, within ABZR86_RS11900at 2667.806 kb on + strand, within ABZR86_RS11900at 2667.905 kb on + strand, within ABZR86_RS11900at 2667.905 kb on + strand, within ABZR86_RS11900at 2667.906 kb on - strand, within ABZR86_RS11900at 2667.906 kb on - strand, within ABZR86_RS11900at 2667.906 kb on - strand, within ABZR86_RS11900at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.260 kb on + strand, within ABZR86_RS11905at 2668.261 kb on - strand, within ABZR86_RS11905at 2668.390 kb on + strand, within ABZR86_RS11905at 2668.390 kb on + strand, within ABZR86_RS11905at 2668.594 kb on + strand, within ABZR86_RS11905at 2668.771 kb on - strandat 2668.806 kb on + strandat 2668.852 kb on - strandat 2668.860 kb on + strand, within ABZR86_RS11910at 2668.860 kb on + strand, within ABZR86_RS11910at 2668.861 kb on - strand, within ABZR86_RS11910at 2668.861 kb on - strand, within ABZR86_RS11910at 2668.861 kb on - strand, within ABZR86_RS11910at 2669.094 kb on + strand, within ABZR86_RS11910at 2669.095 kb on - strand, within ABZR86_RS11910

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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2,666,793 - ABZR86_RS11895 0.41 +0.0
2,667,315 - -1.8
2,667,315 - +1.1
2,667,315 - +0.4
2,667,351 + -0.3
2,667,351 + +0.1
2,667,352 - -0.6
2,667,806 + ABZR86_RS11900 0.56 -2.0
2,667,806 + ABZR86_RS11900 0.56 -1.4
2,667,806 + ABZR86_RS11900 0.56 -1.9
2,667,905 + ABZR86_RS11900 0.70 -2.1
2,667,905 + ABZR86_RS11900 0.70 -2.2
2,667,906 - ABZR86_RS11900 0.70 -0.6
2,667,906 - ABZR86_RS11900 0.70 -1.5
2,667,906 - ABZR86_RS11900 0.70 -0.3
2,668,260 + ABZR86_RS11905 0.22 -1.1
2,668,260 + ABZR86_RS11905 0.22 +0.0
2,668,260 + ABZR86_RS11905 0.22 +0.2
2,668,260 + ABZR86_RS11905 0.22 +0.1
2,668,260 + ABZR86_RS11905 0.22 -0.2
2,668,260 + ABZR86_RS11905 0.22 -1.1
2,668,260 + ABZR86_RS11905 0.22 +0.0
2,668,261 - ABZR86_RS11905 0.22 +0.1
2,668,390 + ABZR86_RS11905 0.43 +1.3
2,668,390 + ABZR86_RS11905 0.43 -0.3
2,668,594 + ABZR86_RS11905 0.76 -0.8
2,668,771 - +1.2
2,668,806 + -1.0
2,668,852 - +0.6
2,668,860 + ABZR86_RS11910 0.10 -0.0
2,668,860 + ABZR86_RS11910 0.10 -0.3
2,668,861 - ABZR86_RS11910 0.10 +0.0
2,668,861 - ABZR86_RS11910 0.10 -0.0
2,668,861 - ABZR86_RS11910 0.10 +0.2
2,669,094 + ABZR86_RS11910 0.30 -0.5
2,669,095 - ABZR86_RS11910 0.30 +0.5

Or see this region's nucleotide sequence