Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11885

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11875 and ABZR86_RS11880 are separated by 58 nucleotidesABZR86_RS11880 and ABZR86_RS11885 overlap by 4 nucleotidesABZR86_RS11885 and ABZR86_RS11890 are separated by 95 nucleotidesABZR86_RS11890 and ABZR86_RS11895 overlap by 4 nucleotides ABZR86_RS11875: ABZR86_RS11875 - outer membrane lipid asymmetry maintenance protein MlaD, at 2,663,168 to 2,664,040 _RS11875 ABZR86_RS11880: ABZR86_RS11880 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 2,664,099 to 2,664,866 _RS11880 ABZR86_RS11885: ABZR86_RS11885 - ATP-binding cassette domain-containing protein, at 2,664,863 to 2,665,696 _RS11885 ABZR86_RS11890: ABZR86_RS11890 - guanylate kinase, at 2,665,792 to 2,666,445 _RS11890 ABZR86_RS11895: ABZR86_RS11895 - YicC/YloC family endoribonuclease, at 2,666,442 to 2,667,302 _RS11895 Position (kb) 2664 2665 2666Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2663.918 kb on - strand, within ABZR86_RS11875at 2663.918 kb on - strand, within ABZR86_RS11875at 2663.918 kb on - strand, within ABZR86_RS11875at 2663.919 kb on + strand, within ABZR86_RS11875at 2663.919 kb on + strand, within ABZR86_RS11875at 2663.920 kb on - strand, within ABZR86_RS11875at 2663.920 kb on - strand, within ABZR86_RS11875at 2663.920 kb on - strand, within ABZR86_RS11875at 2663.971 kb on - strandat 2664.021 kb on + strandat 2664.021 kb on + strandat 2664.075 kb on + strandat 2664.075 kb on + strandat 2664.075 kb on + strandat 2664.076 kb on - strandat 2664.076 kb on - strandat 2664.076 kb on - strandat 2664.087 kb on + strandat 2664.088 kb on - strandat 2664.088 kb on - strandat 2664.178 kb on + strand, within ABZR86_RS11880at 2664.179 kb on - strand, within ABZR86_RS11880at 2664.179 kb on - strand, within ABZR86_RS11880at 2664.211 kb on + strand, within ABZR86_RS11880at 2664.592 kb on + strand, within ABZR86_RS11880at 2664.592 kb on + strand, within ABZR86_RS11880at 2664.898 kb on - strandat 2665.032 kb on + strand, within ABZR86_RS11885at 2665.032 kb on + strand, within ABZR86_RS11885at 2665.032 kb on + strand, within ABZR86_RS11885at 2665.033 kb on - strand, within ABZR86_RS11885at 2665.414 kb on - strand, within ABZR86_RS11885at 2665.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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2,663,918 - ABZR86_RS11875 0.86 -3.3
2,663,918 - ABZR86_RS11875 0.86 -1.1
2,663,918 - ABZR86_RS11875 0.86 -1.8
2,663,919 + ABZR86_RS11875 0.86 -2.3
2,663,919 + ABZR86_RS11875 0.86 -0.0
2,663,920 - ABZR86_RS11875 0.86 -0.6
2,663,920 - ABZR86_RS11875 0.86 -2.7
2,663,920 - ABZR86_RS11875 0.86 -2.9
2,663,971 - -3.3
2,664,021 + -1.6
2,664,021 + -2.4
2,664,075 + -1.4
2,664,075 + -3.2
2,664,075 + +1.6
2,664,076 - -0.1
2,664,076 - -0.7
2,664,076 - -0.4
2,664,087 + -1.9
2,664,088 - -0.6
2,664,088 - -1.5
2,664,178 + ABZR86_RS11880 0.10 -0.8
2,664,179 - ABZR86_RS11880 0.10 -1.2
2,664,179 - ABZR86_RS11880 0.10 -2.8
2,664,211 + ABZR86_RS11880 0.15 -3.3
2,664,592 + ABZR86_RS11880 0.64 -4.2
2,664,592 + ABZR86_RS11880 0.64 -3.0
2,664,898 - -0.6
2,665,032 + ABZR86_RS11885 0.20 -2.8
2,665,032 + ABZR86_RS11885 0.20 -3.5
2,665,032 + ABZR86_RS11885 0.20 -0.7
2,665,033 - ABZR86_RS11885 0.20 -2.5
2,665,414 - ABZR86_RS11885 0.66 -3.1
2,665,729 + -1.8

Or see this region's nucleotide sequence