Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10840

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10835 and ABZR86_RS10840 are separated by 4 nucleotidesABZR86_RS10840 and ABZR86_RS10845 overlap by 4 nucleotidesABZR86_RS10845 and ABZR86_RS10850 are separated by 51 nucleotides ABZR86_RS10835: ABZR86_RS10835 - potassium transporter Kup, at 2,404,337 to 2,406,238 _RS10835 ABZR86_RS10840: ABZR86_RS10840 - Holliday junction branch migration protein RuvA, at 2,406,243 to 2,406,836 _RS10840 ABZR86_RS10845: ABZR86_RS10845 - crossover junction endodeoxyribonuclease RuvC, at 2,406,833 to 2,407,351 _RS10845 ABZR86_RS10850: ABZR86_RS10850 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,407,403 to 2,408,143 _RS10850 Position (kb) 2406 2407Strain fitness (log2 ratio) -3 -2 -1 0 1at 2406.154 kb on - strandat 2406.253 kb on - strandat 2406.686 kb on - strand, within ABZR86_RS10840at 2406.730 kb on + strand, within ABZR86_RS10840at 2406.731 kb on - strand, within ABZR86_RS10840at 2406.731 kb on - strand, within ABZR86_RS10840at 2406.761 kb on - strand, within ABZR86_RS10840at 2406.963 kb on - strand, within ABZR86_RS10845at 2407.305 kb on - strandat 2407.386 kb on + strandat 2407.386 kb on + strandat 2407.387 kb on - strandat 2407.387 kb on - strandat 2407.437 kb on + strandat 2407.438 kb on - strandat 2407.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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2,406,154 - +1.1
2,406,253 - -0.6
2,406,686 - ABZR86_RS10840 0.75 -1.1
2,406,730 + ABZR86_RS10840 0.82 -1.1
2,406,731 - ABZR86_RS10840 0.82 -1.8
2,406,731 - ABZR86_RS10840 0.82 -1.7
2,406,761 - ABZR86_RS10840 0.87 -3.6
2,406,963 - ABZR86_RS10845 0.25 -0.7
2,407,305 - -0.7
2,407,386 + -0.2
2,407,386 + +0.5
2,407,387 - -0.2
2,407,387 - -0.9
2,407,437 + -1.4
2,407,438 - -0.7
2,407,438 - -1.6

Or see this region's nucleotide sequence