Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09480 and ABZR86_RS09485 overlap by 4 nucleotides ABZR86_RS09485 and ABZR86_RS09490 are separated by 248 nucleotides ABZR86_RS09490 and ABZR86_RS09495 overlap by 11 nucleotides
ABZR86_RS09480: ABZR86_RS09480 - Fe-S cluster assembly protein SufB, at 2,110,713 to 2,112,200
_RS09480
ABZR86_RS09485: ABZR86_RS09485 - SUF system Fe-S cluster assembly regulator, at 2,112,197 to 2,112,658
_RS09485
ABZR86_RS09490: ABZR86_RS09490 - P-II family nitrogen regulator, at 2,112,907 to 2,113,245
_RS09490
ABZR86_RS09495: ABZR86_RS09495 - ammonium transporter, at 2,113,235 to 2,114,572
_RS09495
Position (kb)
2112
2113 Strain fitness (log2 ratio)
-2
-1
0
1 at 2112.423 kb on - strand, within ABZR86_RS09485 at 2112.631 kb on - strand at 2112.669 kb on - strand at 2112.669 kb on - strand at 2112.669 kb on - strand at 2112.669 kb on - strand at 2112.712 kb on + strand at 2112.793 kb on - strand at 2112.878 kb on + strand at 2112.878 kb on + strand at 2112.878 kb on + strand at 2112.878 kb on + strand at 2112.878 kb on + strand at 2112.878 kb on + strand at 2112.879 kb on - strand at 2112.879 kb on - strand at 2112.879 kb on - strand at 2112.879 kb on - strand at 2113.057 kb on + strand, within ABZR86_RS09490 at 2113.057 kb on + strand, within ABZR86_RS09490 at 2113.058 kb on - strand, within ABZR86_RS09490 at 2113.058 kb on - strand, within ABZR86_RS09490 at 2113.058 kb on - strand, within ABZR86_RS09490 at 2113.058 kb on - strand, within ABZR86_RS09490 at 2113.243 kb on + strand at 2113.243 kb on + strand at 2113.243 kb on + strand at 2113.243 kb on + strand at 2113.244 kb on - strand at 2113.244 kb on - strand at 2113.244 kb on - strand at 2113.244 kb on - strand at 2113.244 kb on - strand at 2113.244 kb on - strand at 2113.244 kb on - strand at 2113.415 kb on + strand, within ABZR86_RS09495 at 2113.416 kb on - strand, within ABZR86_RS09495 at 2113.505 kb on + strand, within ABZR86_RS09495 at 2113.506 kb on - strand, within ABZR86_RS09495
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 2,112,423 - ABZR86_RS09485 0.49 -1.3 2,112,631 - +0.2 2,112,669 - -0.9 2,112,669 - -1.0 2,112,669 - -0.5 2,112,669 - -0.5 2,112,712 + +0.2 2,112,793 - -0.1 2,112,878 + -1.7 2,112,878 + -1.4 2,112,878 + +0.8 2,112,878 + +0.6 2,112,878 + -1.1 2,112,878 + -0.1 2,112,879 - -0.7 2,112,879 - -0.3 2,112,879 - +0.3 2,112,879 - -0.0 2,113,057 + ABZR86_RS09490 0.44 -0.4 2,113,057 + ABZR86_RS09490 0.44 +0.2 2,113,058 - ABZR86_RS09490 0.45 +0.6 2,113,058 - ABZR86_RS09490 0.45 -0.3 2,113,058 - ABZR86_RS09490 0.45 -0.5 2,113,058 - ABZR86_RS09490 0.45 -2.4 2,113,243 + -0.8 2,113,243 + -0.2 2,113,243 + -1.2 2,113,243 + +0.5 2,113,244 - -1.8 2,113,244 - +0.1 2,113,244 - -0.7 2,113,244 - -0.5 2,113,244 - +0.3 2,113,244 - +0.1 2,113,244 - -1.9 2,113,415 + ABZR86_RS09495 0.13 -0.4 2,113,416 - ABZR86_RS09495 0.14 -0.5 2,113,505 + ABZR86_RS09495 0.20 -1.3 2,113,506 - ABZR86_RS09495 0.20 +1.1
Or see this region's nucleotide sequence