Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09485

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09480 and ABZR86_RS09485 overlap by 4 nucleotidesABZR86_RS09485 and ABZR86_RS09490 are separated by 248 nucleotidesABZR86_RS09490 and ABZR86_RS09495 overlap by 11 nucleotides ABZR86_RS09480: ABZR86_RS09480 - Fe-S cluster assembly protein SufB, at 2,110,713 to 2,112,200 _RS09480 ABZR86_RS09485: ABZR86_RS09485 - SUF system Fe-S cluster assembly regulator, at 2,112,197 to 2,112,658 _RS09485 ABZR86_RS09490: ABZR86_RS09490 - P-II family nitrogen regulator, at 2,112,907 to 2,113,245 _RS09490 ABZR86_RS09495: ABZR86_RS09495 - ammonium transporter, at 2,113,235 to 2,114,572 _RS09495 Position (kb) 2112 2113Strain fitness (log2 ratio) -2 -1 0 1at 2112.423 kb on - strand, within ABZR86_RS09485at 2112.631 kb on - strandat 2112.669 kb on - strandat 2112.669 kb on - strandat 2112.669 kb on - strandat 2112.669 kb on - strandat 2112.712 kb on + strandat 2112.793 kb on - strandat 2112.878 kb on + strandat 2112.878 kb on + strandat 2112.878 kb on + strandat 2112.878 kb on + strandat 2112.878 kb on + strandat 2112.878 kb on + strandat 2112.879 kb on - strandat 2112.879 kb on - strandat 2112.879 kb on - strandat 2112.879 kb on - strandat 2113.057 kb on + strand, within ABZR86_RS09490at 2113.057 kb on + strand, within ABZR86_RS09490at 2113.058 kb on - strand, within ABZR86_RS09490at 2113.058 kb on - strand, within ABZR86_RS09490at 2113.058 kb on - strand, within ABZR86_RS09490at 2113.058 kb on - strand, within ABZR86_RS09490at 2113.243 kb on + strandat 2113.243 kb on + strandat 2113.243 kb on + strandat 2113.243 kb on + strandat 2113.244 kb on - strandat 2113.244 kb on - strandat 2113.244 kb on - strandat 2113.244 kb on - strandat 2113.244 kb on - strandat 2113.244 kb on - strandat 2113.244 kb on - strandat 2113.415 kb on + strand, within ABZR86_RS09495at 2113.416 kb on - strand, within ABZR86_RS09495at 2113.505 kb on + strand, within ABZR86_RS09495at 2113.506 kb on - strand, within ABZR86_RS09495

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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2,112,423 - ABZR86_RS09485 0.49 -1.3
2,112,631 - +0.2
2,112,669 - -0.9
2,112,669 - -1.0
2,112,669 - -0.5
2,112,669 - -0.5
2,112,712 + +0.2
2,112,793 - -0.1
2,112,878 + -1.7
2,112,878 + -1.4
2,112,878 + +0.8
2,112,878 + +0.6
2,112,878 + -1.1
2,112,878 + -0.1
2,112,879 - -0.7
2,112,879 - -0.3
2,112,879 - +0.3
2,112,879 - -0.0
2,113,057 + ABZR86_RS09490 0.44 -0.4
2,113,057 + ABZR86_RS09490 0.44 +0.2
2,113,058 - ABZR86_RS09490 0.45 +0.6
2,113,058 - ABZR86_RS09490 0.45 -0.3
2,113,058 - ABZR86_RS09490 0.45 -0.5
2,113,058 - ABZR86_RS09490 0.45 -2.4
2,113,243 + -0.8
2,113,243 + -0.2
2,113,243 + -1.2
2,113,243 + +0.5
2,113,244 - -1.8
2,113,244 - +0.1
2,113,244 - -0.7
2,113,244 - -0.5
2,113,244 - +0.3
2,113,244 - +0.1
2,113,244 - -1.9
2,113,415 + ABZR86_RS09495 0.13 -0.4
2,113,416 - ABZR86_RS09495 0.14 -0.5
2,113,505 + ABZR86_RS09495 0.20 -1.3
2,113,506 - ABZR86_RS09495 0.20 +1.1

Or see this region's nucleotide sequence