Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08935

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08930 and ABZR86_RS08935 are separated by 59 nucleotidesABZR86_RS08935 and ABZR86_RS08940 are separated by 79 nucleotides ABZR86_RS08930: ABZR86_RS08930 - FAD-dependent oxidoreductase, at 1,991,622 to 1,992,881 _RS08930 ABZR86_RS08935: ABZR86_RS08935 - hypothetical protein, at 1,992,941 to 1,994,218 _RS08935 ABZR86_RS08940: ABZR86_RS08940 - hypothetical protein, at 1,994,298 to 1,995,671 _RS08940 Position (kb) 1992 1993 1994 1995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1992.888 kb on + strandat 1992.888 kb on + strandat 1992.889 kb on - strandat 1992.889 kb on - strandat 1992.893 kb on + strandat 1992.894 kb on - strandat 1992.894 kb on - strandat 1993.060 kb on + strandat 1993.060 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.064 kb on + strandat 1993.065 kb on - strandat 1993.065 kb on - strandat 1993.065 kb on - strandat 1993.065 kb on - strandat 1993.065 kb on - strandat 1993.065 kb on - strandat 1993.199 kb on + strand, within ABZR86_RS08935at 1993.199 kb on + strand, within ABZR86_RS08935at 1993.200 kb on - strand, within ABZR86_RS08935at 1993.200 kb on - strand, within ABZR86_RS08935at 1993.364 kb on - strand, within ABZR86_RS08935at 1993.412 kb on + strand, within ABZR86_RS08935at 1993.412 kb on + strand, within ABZR86_RS08935at 1993.412 kb on + strand, within ABZR86_RS08935at 1993.412 kb on + strand, within ABZR86_RS08935at 1993.413 kb on - strand, within ABZR86_RS08935at 1993.413 kb on - strand, within ABZR86_RS08935at 1993.413 kb on - strand, within ABZR86_RS08935at 1993.413 kb on - strand, within ABZR86_RS08935at 1993.413 kb on - strand, within ABZR86_RS08935at 1993.413 kb on - strand, within ABZR86_RS08935at 1993.414 kb on + strand, within ABZR86_RS08935at 1993.414 kb on + strand, within ABZR86_RS08935at 1993.415 kb on - strand, within ABZR86_RS08935at 1993.500 kb on - strand, within ABZR86_RS08935at 1993.500 kb on - strand, within ABZR86_RS08935at 1993.569 kb on - strand, within ABZR86_RS08935at 1993.569 kb on - strand, within ABZR86_RS08935at 1993.626 kb on - strand, within ABZR86_RS08935at 1993.679 kb on + strand, within ABZR86_RS08935at 1993.847 kb on + strand, within ABZR86_RS08935at 1993.876 kb on - strand, within ABZR86_RS08935at 1994.096 kb on + strandat 1994.132 kb on + strandat 1994.132 kb on + strandat 1994.132 kb on + strandat 1994.132 kb on + strandat 1994.133 kb on - strandat 1994.133 kb on - strandat 1994.133 kb on - strandat 1994.133 kb on - strandat 1994.150 kb on + strandat 1994.150 kb on + strandat 1994.150 kb on + strandat 1994.151 kb on - strandat 1994.262 kb on + strandat 1994.263 kb on - strandat 1994.263 kb on - strandat 1994.263 kb on - strandat 1994.263 kb on - strandat 1994.454 kb on + strand, within ABZR86_RS08940at 1994.455 kb on - strand, within ABZR86_RS08940at 1994.544 kb on + strand, within ABZR86_RS08940at 1994.545 kb on - strand, within ABZR86_RS08940at 1994.545 kb on - strand, within ABZR86_RS08940at 1994.545 kb on - strand, within ABZR86_RS08940at 1994.545 kb on - strand, within ABZR86_RS08940at 1994.589 kb on + strand, within ABZR86_RS08940at 1994.590 kb on - strand, within ABZR86_RS08940at 1994.590 kb on - strand, within ABZR86_RS08940at 1994.590 kb on - strand, within ABZR86_RS08940at 1994.590 kb on - strand, within ABZR86_RS08940at 1994.763 kb on + strand, within ABZR86_RS08940at 1994.763 kb on + strand, within ABZR86_RS08940at 1994.764 kb on - strand, within ABZR86_RS08940at 1994.764 kb on - strand, within ABZR86_RS08940at 1994.824 kb on + strand, within ABZR86_RS08940at 1994.844 kb on + strand, within ABZR86_RS08940at 1994.844 kb on + strand, within ABZR86_RS08940at 1994.844 kb on + strand, within ABZR86_RS08940at 1994.863 kb on - strand, within ABZR86_RS08940at 1994.905 kb on + strand, within ABZR86_RS08940at 1994.905 kb on + strand, within ABZR86_RS08940at 1994.913 kb on + strand, within ABZR86_RS08940at 1994.970 kb on + strand, within ABZR86_RS08940at 1994.970 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.190 kb on - strand, within ABZR86_RS08940

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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1,992,888 + +0.4
1,992,888 + +0.2
1,992,889 - +0.1
1,992,889 - +0.4
1,992,893 + +0.6
1,992,894 - +0.4
1,992,894 - +1.2
1,993,060 + -0.1
1,993,060 + +0.6
1,993,064 + +0.6
1,993,064 + -0.4
1,993,064 + -1.5
1,993,064 + +2.6
1,993,064 + -0.6
1,993,064 + +2.1
1,993,064 + -0.4
1,993,064 + +0.6
1,993,064 + -1.4
1,993,065 - -0.6
1,993,065 - +0.1
1,993,065 - -0.0
1,993,065 - -0.4
1,993,065 - -0.5
1,993,065 - +0.1
1,993,199 + ABZR86_RS08935 0.20 -0.4
1,993,199 + ABZR86_RS08935 0.20 +0.5
1,993,200 - ABZR86_RS08935 0.20 +0.5
1,993,200 - ABZR86_RS08935 0.20 -0.0
1,993,364 - ABZR86_RS08935 0.33 -0.1
1,993,412 + ABZR86_RS08935 0.37 +0.2
1,993,412 + ABZR86_RS08935 0.37 -0.2
1,993,412 + ABZR86_RS08935 0.37 -0.6
1,993,412 + ABZR86_RS08935 0.37 -0.5
1,993,413 - ABZR86_RS08935 0.37 -0.3
1,993,413 - ABZR86_RS08935 0.37 +0.3
1,993,413 - ABZR86_RS08935 0.37 -0.0
1,993,413 - ABZR86_RS08935 0.37 -1.9
1,993,413 - ABZR86_RS08935 0.37 -0.2
1,993,413 - ABZR86_RS08935 0.37 -0.3
1,993,414 + ABZR86_RS08935 0.37 +0.0
1,993,414 + ABZR86_RS08935 0.37 +0.3
1,993,415 - ABZR86_RS08935 0.37 -0.2
1,993,500 - ABZR86_RS08935 0.44 -1.4
1,993,500 - ABZR86_RS08935 0.44 -0.4
1,993,569 - ABZR86_RS08935 0.49 -0.9
1,993,569 - ABZR86_RS08935 0.49 -1.3
1,993,626 - ABZR86_RS08935 0.54 +0.3
1,993,679 + ABZR86_RS08935 0.58 +0.9
1,993,847 + ABZR86_RS08935 0.71 -0.0
1,993,876 - ABZR86_RS08935 0.73 -0.2
1,994,096 + -0.4
1,994,132 + -0.5
1,994,132 + -1.6
1,994,132 + -1.5
1,994,132 + +0.1
1,994,133 - -1.6
1,994,133 - +0.0
1,994,133 - +0.7
1,994,133 - -0.7
1,994,150 + -0.5
1,994,150 + +0.4
1,994,150 + +1.4
1,994,151 - +0.0
1,994,262 + -0.6
1,994,263 - +0.2
1,994,263 - -0.4
1,994,263 - +0.3
1,994,263 - -2.8
1,994,454 + ABZR86_RS08940 0.11 -0.2
1,994,455 - ABZR86_RS08940 0.11 +0.9
1,994,544 + ABZR86_RS08940 0.18 +0.2
1,994,545 - ABZR86_RS08940 0.18 +0.1
1,994,545 - ABZR86_RS08940 0.18 +0.5
1,994,545 - ABZR86_RS08940 0.18 +1.5
1,994,545 - ABZR86_RS08940 0.18 +0.8
1,994,589 + ABZR86_RS08940 0.21 -0.7
1,994,590 - ABZR86_RS08940 0.21 +1.5
1,994,590 - ABZR86_RS08940 0.21 -0.6
1,994,590 - ABZR86_RS08940 0.21 +0.4
1,994,590 - ABZR86_RS08940 0.21 +1.1
1,994,763 + ABZR86_RS08940 0.34 -0.1
1,994,763 + ABZR86_RS08940 0.34 -0.0
1,994,764 - ABZR86_RS08940 0.34 +0.1
1,994,764 - ABZR86_RS08940 0.34 -0.6
1,994,824 + ABZR86_RS08940 0.38 -0.6
1,994,844 + ABZR86_RS08940 0.40 +0.8
1,994,844 + ABZR86_RS08940 0.40 +0.3
1,994,844 + ABZR86_RS08940 0.40 +2.0
1,994,863 - ABZR86_RS08940 0.41 -1.0
1,994,905 + ABZR86_RS08940 0.44 -0.7
1,994,905 + ABZR86_RS08940 0.44 +0.1
1,994,913 + ABZR86_RS08940 0.45 -0.9
1,994,970 + ABZR86_RS08940 0.49 +0.2
1,994,970 + ABZR86_RS08940 0.49 -0.3
1,995,189 + ABZR86_RS08940 0.65 +0.1
1,995,189 + ABZR86_RS08940 0.65 -0.2
1,995,189 + ABZR86_RS08940 0.65 +0.6
1,995,189 + ABZR86_RS08940 0.65 +1.1
1,995,190 - ABZR86_RS08940 0.65 +0.6

Or see this region's nucleotide sequence