Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08880 and ABZR86_RS08885 are separated by 7 nucleotides ABZR86_RS08885 and ABZR86_RS08890 are separated by 34 nucleotides ABZR86_RS08890 and ABZR86_RS08895 are separated by 16 nucleotides ABZR86_RS08895 and ABZR86_RS08900 are separated by 62 nucleotides
ABZR86_RS08880: ABZR86_RS08880 - asparagine--tRNA ligase, at 1,982,606 to 1,984,006
_RS08880
ABZR86_RS08885: ABZR86_RS08885 - MalM family protein, at 1,984,014 to 1,984,892
_RS08885
ABZR86_RS08890: ABZR86_RS08890 - hypothetical protein, at 1,984,927 to 1,985,247
_RS08890
ABZR86_RS08895: ABZR86_RS08895 - SDR family oxidoreductase, at 1,985,264 to 1,986,055
_RS08895
ABZR86_RS08900: ABZR86_RS08900 - aldehyde dehydrogenase, at 1,986,118 to 1,987,569
_RS08900
Position (kb)
1984
1985
1986 Strain fitness (log2 ratio)
-2
-1
0
1 at 1984.191 kb on + strand, within ABZR86_RS08885 at 1984.191 kb on + strand, within ABZR86_RS08885 at 1984.191 kb on + strand, within ABZR86_RS08885 at 1984.191 kb on + strand, within ABZR86_RS08885 at 1984.192 kb on - strand, within ABZR86_RS08885 at 1984.206 kb on + strand, within ABZR86_RS08885 at 1984.290 kb on + strand, within ABZR86_RS08885 at 1984.290 kb on + strand, within ABZR86_RS08885 at 1984.291 kb on - strand, within ABZR86_RS08885 at 1984.291 kb on - strand, within ABZR86_RS08885 at 1984.291 kb on - strand, within ABZR86_RS08885 at 1984.291 kb on - strand, within ABZR86_RS08885 at 1984.383 kb on + strand, within ABZR86_RS08885 at 1984.383 kb on + strand, within ABZR86_RS08885 at 1984.383 kb on + strand, within ABZR86_RS08885 at 1984.383 kb on + strand, within ABZR86_RS08885 at 1984.384 kb on - strand, within ABZR86_RS08885 at 1984.384 kb on - strand, within ABZR86_RS08885 at 1984.384 kb on - strand, within ABZR86_RS08885 at 1984.384 kb on - strand, within ABZR86_RS08885 at 1984.384 kb on - strand, within ABZR86_RS08885 at 1984.542 kb on + strand, within ABZR86_RS08885 at 1984.542 kb on + strand, within ABZR86_RS08885 at 1984.542 kb on + strand, within ABZR86_RS08885 at 1984.543 kb on - strand, within ABZR86_RS08885 at 1984.543 kb on - strand, within ABZR86_RS08885 at 1984.543 kb on - strand, within ABZR86_RS08885 at 1984.543 kb on - strand, within ABZR86_RS08885 at 1984.575 kb on + strand, within ABZR86_RS08885 at 1984.576 kb on - strand, within ABZR86_RS08885 at 1984.576 kb on - strand, within ABZR86_RS08885 at 1984.576 kb on - strand, within ABZR86_RS08885 at 1984.576 kb on - strand, within ABZR86_RS08885 at 1984.576 kb on - strand, within ABZR86_RS08885 at 1984.576 kb on - strand, within ABZR86_RS08885 at 1984.832 kb on + strand at 1984.833 kb on - strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.932 kb on + strand at 1984.933 kb on - strand at 1984.939 kb on + strand at 1984.939 kb on + strand at 1984.939 kb on + strand at 1984.940 kb on - strand at 1984.940 kb on - strand at 1984.940 kb on - strand at 1984.940 kb on - strand at 1984.940 kb on - strand at 1984.940 kb on - strand at 1984.940 kb on - strand at 1985.177 kb on - strand, within ABZR86_RS08890 at 1985.227 kb on + strand at 1985.227 kb on + strand at 1985.227 kb on + strand at 1985.228 kb on - strand at 1985.228 kb on - strand at 1985.422 kb on + strand, within ABZR86_RS08895 at 1985.422 kb on + strand, within ABZR86_RS08895 at 1985.422 kb on + strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.828 kb on + strand, within ABZR86_RS08895 at 1985.999 kb on + strand at 1985.999 kb on + strand at 1986.000 kb on - strand at 1986.000 kb on - strand at 1986.105 kb on + strand at 1986.106 kb on - strand at 1986.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 1,984,191 + ABZR86_RS08885 0.20 -0.4 1,984,191 + ABZR86_RS08885 0.20 -0.6 1,984,191 + ABZR86_RS08885 0.20 -1.3 1,984,191 + ABZR86_RS08885 0.20 -0.2 1,984,192 - ABZR86_RS08885 0.20 -0.8 1,984,206 + ABZR86_RS08885 0.22 +0.3 1,984,290 + ABZR86_RS08885 0.31 -0.0 1,984,290 + ABZR86_RS08885 0.31 -2.3 1,984,291 - ABZR86_RS08885 0.32 -1.4 1,984,291 - ABZR86_RS08885 0.32 +1.0 1,984,291 - ABZR86_RS08885 0.32 +0.8 1,984,291 - ABZR86_RS08885 0.32 +0.7 1,984,383 + ABZR86_RS08885 0.42 -0.3 1,984,383 + ABZR86_RS08885 0.42 +0.7 1,984,383 + ABZR86_RS08885 0.42 +0.4 1,984,383 + ABZR86_RS08885 0.42 -0.6 1,984,384 - ABZR86_RS08885 0.42 -0.1 1,984,384 - ABZR86_RS08885 0.42 +0.1 1,984,384 - ABZR86_RS08885 0.42 -0.0 1,984,384 - ABZR86_RS08885 0.42 +1.1 1,984,384 - ABZR86_RS08885 0.42 +1.7 1,984,542 + ABZR86_RS08885 0.60 +0.1 1,984,542 + ABZR86_RS08885 0.60 -0.1 1,984,542 + ABZR86_RS08885 0.60 -0.3 1,984,543 - ABZR86_RS08885 0.60 -1.0 1,984,543 - ABZR86_RS08885 0.60 +0.7 1,984,543 - ABZR86_RS08885 0.60 -0.6 1,984,543 - ABZR86_RS08885 0.60 +0.0 1,984,575 + ABZR86_RS08885 0.64 -0.5 1,984,576 - ABZR86_RS08885 0.64 -0.1 1,984,576 - ABZR86_RS08885 0.64 -0.6 1,984,576 - ABZR86_RS08885 0.64 +0.3 1,984,576 - ABZR86_RS08885 0.64 +0.0 1,984,576 - ABZR86_RS08885 0.64 -0.4 1,984,576 - ABZR86_RS08885 0.64 -1.2 1,984,832 + -0.0 1,984,833 - +0.8 1,984,932 + -0.5 1,984,932 + +0.5 1,984,932 + +1.5 1,984,932 + -1.1 1,984,932 + -0.4 1,984,932 + -2.1 1,984,932 + -0.5 1,984,932 + -0.8 1,984,933 - -1.2 1,984,939 + +0.3 1,984,939 + -0.7 1,984,939 + +0.7 1,984,940 - -0.1 1,984,940 - -0.5 1,984,940 - -0.8 1,984,940 - -0.9 1,984,940 - -0.6 1,984,940 - +0.4 1,984,940 - +0.1 1,985,177 - ABZR86_RS08890 0.78 -0.5 1,985,227 + -0.3 1,985,227 + +0.8 1,985,227 + -0.9 1,985,228 - +0.4 1,985,228 - +0.3 1,985,422 + ABZR86_RS08895 0.20 -0.8 1,985,422 + ABZR86_RS08895 0.20 +0.4 1,985,422 + ABZR86_RS08895 0.20 +0.0 1,985,423 - ABZR86_RS08895 0.20 +0.1 1,985,423 - ABZR86_RS08895 0.20 +0.5 1,985,423 - ABZR86_RS08895 0.20 -0.7 1,985,423 - ABZR86_RS08895 0.20 +0.5 1,985,828 + ABZR86_RS08895 0.71 +0.1 1,985,999 + +1.0 1,985,999 + +1.1 1,986,000 - +0.2 1,986,000 - +0.1 1,986,105 + -0.8 1,986,106 - +0.2 1,986,106 - +1.5
Or see this region's nucleotide sequence