Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07400

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07395 and ABZR86_RS07400 are separated by 3 nucleotidesABZR86_RS07400 and ABZR86_RS07405 overlap by 4 nucleotidesABZR86_RS07405 and ABZR86_RS07410 are separated by 7 nucleotides ABZR86_RS07395: ABZR86_RS07395 - TonB-dependent siderophore receptor, at 1,629,335 to 1,631,563 _RS07395 ABZR86_RS07400: ABZR86_RS07400 - hypothetical protein, at 1,631,567 to 1,631,827 _RS07400 ABZR86_RS07405: ABZR86_RS07405 - hypothetical protein, at 1,631,824 to 1,632,084 _RS07405 ABZR86_RS07410: ABZR86_RS07410 - PepSY-associated TM helix domain-containing protein, at 1,632,092 to 1,633,690 _RS07410 Position (kb) 1631 1632Strain fitness (log2 ratio) -2 -1 0 1at 1630.683 kb on - strand, within ABZR86_RS07395at 1630.685 kb on + strand, within ABZR86_RS07395at 1630.686 kb on - strand, within ABZR86_RS07395at 1630.686 kb on - strand, within ABZR86_RS07395at 1630.686 kb on - strand, within ABZR86_RS07395at 1630.686 kb on - strand, within ABZR86_RS07395at 1630.725 kb on - strand, within ABZR86_RS07395at 1630.811 kb on + strand, within ABZR86_RS07395at 1630.811 kb on + strand, within ABZR86_RS07395at 1630.812 kb on - strand, within ABZR86_RS07395at 1630.812 kb on - strand, within ABZR86_RS07395at 1630.812 kb on - strand, within ABZR86_RS07395at 1630.829 kb on + strand, within ABZR86_RS07395at 1630.829 kb on + strand, within ABZR86_RS07395at 1630.829 kb on + strand, within ABZR86_RS07395at 1630.829 kb on + strand, within ABZR86_RS07395at 1630.830 kb on - strand, within ABZR86_RS07395at 1630.886 kb on + strand, within ABZR86_RS07395at 1630.895 kb on + strand, within ABZR86_RS07395at 1630.895 kb on + strand, within ABZR86_RS07395at 1630.895 kb on + strand, within ABZR86_RS07395at 1630.896 kb on - strand, within ABZR86_RS07395at 1630.896 kb on - strand, within ABZR86_RS07395at 1630.904 kb on + strand, within ABZR86_RS07395at 1630.904 kb on + strand, within ABZR86_RS07395at 1631.060 kb on + strand, within ABZR86_RS07395at 1631.060 kb on + strand, within ABZR86_RS07395at 1631.061 kb on - strand, within ABZR86_RS07395at 1631.061 kb on - strand, within ABZR86_RS07395at 1631.061 kb on - strand, within ABZR86_RS07395at 1631.061 kb on - strand, within ABZR86_RS07395at 1631.102 kb on + strand, within ABZR86_RS07395at 1631.102 kb on + strand, within ABZR86_RS07395at 1631.102 kb on + strand, within ABZR86_RS07395at 1631.103 kb on - strand, within ABZR86_RS07395at 1631.103 kb on - strand, within ABZR86_RS07395at 1631.103 kb on - strand, within ABZR86_RS07395at 1631.103 kb on - strand, within ABZR86_RS07395at 1631.237 kb on + strand, within ABZR86_RS07395at 1631.237 kb on + strand, within ABZR86_RS07395at 1631.237 kb on + strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.238 kb on - strand, within ABZR86_RS07395at 1631.273 kb on + strand, within ABZR86_RS07395at 1631.274 kb on - strand, within ABZR86_RS07395at 1631.274 kb on - strand, within ABZR86_RS07395at 1631.378 kb on + strandat 1631.379 kb on - strandat 1631.379 kb on - strandat 1631.379 kb on - strandat 1631.379 kb on - strandat 1631.396 kb on + strandat 1631.396 kb on + strandat 1631.396 kb on + strandat 1631.396 kb on + strandat 1631.396 kb on + strandat 1631.397 kb on - strandat 1631.397 kb on - strandat 1631.397 kb on - strandat 1631.397 kb on - strandat 1631.397 kb on - strandat 1631.483 kb on + strandat 1631.483 kb on + strandat 1631.484 kb on - strandat 1631.498 kb on + strandat 1631.514 kb on - strandat 1631.517 kb on - strandat 1631.553 kb on - strandat 1631.553 kb on - strandat 1631.755 kb on + strand, within ABZR86_RS07400at 1631.789 kb on + strand, within ABZR86_RS07400at 1631.790 kb on - strand, within ABZR86_RS07400at 1631.984 kb on - strand, within ABZR86_RS07405at 1631.984 kb on - strand, within ABZR86_RS07405at 1631.984 kb on - strand, within ABZR86_RS07405at 1631.984 kb on - strand, within ABZR86_RS07405at 1631.984 kb on - strand, within ABZR86_RS07405at 1631.984 kb on - strand, within ABZR86_RS07405at 1631.985 kb on + strand, within ABZR86_RS07405at 1631.985 kb on + strand, within ABZR86_RS07405at 1631.985 kb on + strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1631.986 kb on - strand, within ABZR86_RS07405at 1632.130 kb on + strandat 1632.130 kb on + strandat 1632.130 kb on + strandat 1632.130 kb on + strandat 1632.176 kb on + strandat 1632.176 kb on + strandat 1632.177 kb on - strandat 1632.177 kb on - strandat 1632.258 kb on + strand, within ABZR86_RS07410at 1632.259 kb on - strand, within ABZR86_RS07410at 1632.359 kb on + strand, within ABZR86_RS07410at 1632.359 kb on + strand, within ABZR86_RS07410at 1632.360 kb on - strand, within ABZR86_RS07410at 1632.464 kb on + strand, within ABZR86_RS07410at 1632.506 kb on + strand, within ABZR86_RS07410at 1632.507 kb on - strand, within ABZR86_RS07410at 1632.507 kb on - strand, within ABZR86_RS07410at 1632.533 kb on + strand, within ABZR86_RS07410

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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1,630,683 - ABZR86_RS07395 0.60 -0.6
1,630,685 + ABZR86_RS07395 0.61 -0.1
1,630,686 - ABZR86_RS07395 0.61 -0.8
1,630,686 - ABZR86_RS07395 0.61 -0.2
1,630,686 - ABZR86_RS07395 0.61 -0.7
1,630,686 - ABZR86_RS07395 0.61 -0.1
1,630,725 - ABZR86_RS07395 0.62 +0.1
1,630,811 + ABZR86_RS07395 0.66 -0.1
1,630,811 + ABZR86_RS07395 0.66 +1.0
1,630,812 - ABZR86_RS07395 0.66 -0.6
1,630,812 - ABZR86_RS07395 0.66 -0.3
1,630,812 - ABZR86_RS07395 0.66 -0.2
1,630,829 + ABZR86_RS07395 0.67 +0.1
1,630,829 + ABZR86_RS07395 0.67 +0.1
1,630,829 + ABZR86_RS07395 0.67 +0.3
1,630,829 + ABZR86_RS07395 0.67 +0.3
1,630,830 - ABZR86_RS07395 0.67 -1.0
1,630,886 + ABZR86_RS07395 0.70 +0.8
1,630,895 + ABZR86_RS07395 0.70 +0.3
1,630,895 + ABZR86_RS07395 0.70 -0.1
1,630,895 + ABZR86_RS07395 0.70 +0.3
1,630,896 - ABZR86_RS07395 0.70 -0.7
1,630,896 - ABZR86_RS07395 0.70 -1.3
1,630,904 + ABZR86_RS07395 0.70 +0.2
1,630,904 + ABZR86_RS07395 0.70 +1.3
1,631,060 + ABZR86_RS07395 0.77 +0.4
1,631,060 + ABZR86_RS07395 0.77 -0.2
1,631,061 - ABZR86_RS07395 0.77 -0.5
1,631,061 - ABZR86_RS07395 0.77 -0.4
1,631,061 - ABZR86_RS07395 0.77 +0.3
1,631,061 - ABZR86_RS07395 0.77 -0.3
1,631,102 + ABZR86_RS07395 0.79 -0.2
1,631,102 + ABZR86_RS07395 0.79 -0.9
1,631,102 + ABZR86_RS07395 0.79 +0.9
1,631,103 - ABZR86_RS07395 0.79 -1.4
1,631,103 - ABZR86_RS07395 0.79 +0.2
1,631,103 - ABZR86_RS07395 0.79 +0.8
1,631,103 - ABZR86_RS07395 0.79 -0.3
1,631,237 + ABZR86_RS07395 0.85 -0.5
1,631,237 + ABZR86_RS07395 0.85 -0.3
1,631,237 + ABZR86_RS07395 0.85 +1.1
1,631,238 - ABZR86_RS07395 0.85 -0.3
1,631,238 - ABZR86_RS07395 0.85 -2.6
1,631,238 - ABZR86_RS07395 0.85 -0.4
1,631,238 - ABZR86_RS07395 0.85 -0.2
1,631,238 - ABZR86_RS07395 0.85 -1.0
1,631,238 - ABZR86_RS07395 0.85 -0.0
1,631,238 - ABZR86_RS07395 0.85 -0.1
1,631,238 - ABZR86_RS07395 0.85 -0.7
1,631,238 - ABZR86_RS07395 0.85 +0.3
1,631,273 + ABZR86_RS07395 0.87 -0.4
1,631,274 - ABZR86_RS07395 0.87 +0.5
1,631,274 - ABZR86_RS07395 0.87 -0.7
1,631,378 + -2.2
1,631,379 - -0.4
1,631,379 - +0.6
1,631,379 - +0.5
1,631,379 - +0.2
1,631,396 + +1.2
1,631,396 + +0.0
1,631,396 + +1.2
1,631,396 + +0.2
1,631,396 + +0.2
1,631,397 - +0.3
1,631,397 - -0.3
1,631,397 - -0.3
1,631,397 - -0.9
1,631,397 - +0.1
1,631,483 + -0.9
1,631,483 + +0.3
1,631,484 - +0.1
1,631,498 + -0.2
1,631,514 - -0.4
1,631,517 - +0.2
1,631,553 - -1.0
1,631,553 - +0.8
1,631,755 + ABZR86_RS07400 0.72 +0.0
1,631,789 + ABZR86_RS07400 0.85 -0.5
1,631,790 - ABZR86_RS07400 0.85 -1.2
1,631,984 - ABZR86_RS07405 0.61 +0.7
1,631,984 - ABZR86_RS07405 0.61 -1.7
1,631,984 - ABZR86_RS07405 0.61 +0.1
1,631,984 - ABZR86_RS07405 0.61 -0.8
1,631,984 - ABZR86_RS07405 0.61 -1.7
1,631,984 - ABZR86_RS07405 0.61 +0.0
1,631,985 + ABZR86_RS07405 0.62 +0.6
1,631,985 + ABZR86_RS07405 0.62 -0.3
1,631,985 + ABZR86_RS07405 0.62 -1.1
1,631,986 - ABZR86_RS07405 0.62 +1.2
1,631,986 - ABZR86_RS07405 0.62 -0.2
1,631,986 - ABZR86_RS07405 0.62 +0.3
1,631,986 - ABZR86_RS07405 0.62 -0.4
1,631,986 - ABZR86_RS07405 0.62 -1.1
1,631,986 - ABZR86_RS07405 0.62 -0.2
1,631,986 - ABZR86_RS07405 0.62 +0.3
1,632,130 + +0.4
1,632,130 + +0.0
1,632,130 + +1.3
1,632,130 + +0.3
1,632,176 + +0.3
1,632,176 + -0.5
1,632,177 - -0.2
1,632,177 - +1.2
1,632,258 + ABZR86_RS07410 0.10 -1.5
1,632,259 - ABZR86_RS07410 0.10 -1.5
1,632,359 + ABZR86_RS07410 0.17 -0.3
1,632,359 + ABZR86_RS07410 0.17 -0.8
1,632,360 - ABZR86_RS07410 0.17 -0.0
1,632,464 + ABZR86_RS07410 0.23 -0.5
1,632,506 + ABZR86_RS07410 0.26 +0.2
1,632,507 - ABZR86_RS07410 0.26 -0.9
1,632,507 - ABZR86_RS07410 0.26 +0.2
1,632,533 + ABZR86_RS07410 0.28 -0.3

Or see this region's nucleotide sequence