Strain Fitness in Dyella japonica UNC79MFTsu3.2

Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06940

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Nalidixic 0.08 mg/ml
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1,526,159	+	ABZR86_RS06930	0.63	+0.7
1,526,159	+	ABZR86_RS06930	0.63	-1.3
1,526,160	-	ABZR86_RS06930	0.63	+0.0
1,526,160	-	ABZR86_RS06930	0.63	-1.1
1,526,160	-	ABZR86_RS06930	0.63	-0.3
1,526,296	-			+0.3
1,526,296	-			+0.7
1,526,347	+			-0.0
1,526,348	-			-0.6
1,526,392	-			+0.1
1,526,392	-			+1.5
1,526,393	+			-0.3
1,526,393	+			+0.6
1,526,394	-			-0.5
1,526,394	-			-0.2
1,526,552	+			-0.2
1,526,552	+			+0.9
1,526,552	+			-0.5
1,526,552	+			-0.7
1,526,552	+			-0.7
1,526,552	+			-1.6
1,526,552	+			+0.8
1,526,553	-			+0.7
1,526,553	-			-1.2
1,526,553	-			+0.2
1,526,553	-			-0.4
1,526,640	+			+0.1
1,526,640	+			+0.4
1,526,640	+			+0.5
1,526,640	+			+1.3
1,526,640	+			+2.0
1,526,641	-			+0.0
1,526,641	-			-0.1
1,526,641	-			-0.6
1,526,641	-			+0.5
1,526,644	-			+2.3
1,526,644	-			-0.3
1,526,668	+			-0.1
1,526,668	+			+1.4
1,526,668	+			-0.0
1,526,677	+			-1.2
1,526,677	+			+0.4
1,526,678	-			-0.5
1,526,678	-			-0.8
1,526,678	-			+0.4
1,526,775	+			-1.3
1,526,775	+			+2.9
1,526,775	+			+0.3
1,526,776	-			-0.3
1,526,776	-			-0.3
1,526,776	-			-0.9
1,526,776	-			-0.4
1,526,804	-			+0.2
1,526,804	-			-0.3
1,526,804	-			-1.0
1,526,804	-			+0.4
1,526,805	+			+0.4
1,526,805	+			-1.6
1,526,805	+			-2.5
1,526,805	+			-1.0
1,526,805	+			-1.6
1,526,806	-			+1.8
1,526,806	-			+0.0
1,526,806	-			-0.3
1,526,806	-			+1.2
1,526,806	-			+0.3
1,526,806	-			+1.9
1,526,806	-			-1.2
1,526,806	-			-0.2
1,526,852	+	ABZR86_RS06935	0.14	-0.5
1,526,852	+	ABZR86_RS06935	0.14	-1.8
1,526,986	+	ABZR86_RS06935	0.59	-0.0
1,526,986	+	ABZR86_RS06935	0.59	+1.8
1,526,986	+	ABZR86_RS06935	0.59	-0.4
1,526,987	-	ABZR86_RS06935	0.59	-0.9
1,527,057	+	ABZR86_RS06935	0.83	+0.7
1,527,057	+	ABZR86_RS06935	0.83	+0.5
1,527,058	-	ABZR86_RS06935	0.83	+0.7
1,527,058	-	ABZR86_RS06935	0.83	-0.0
1,527,127	+			-0.7
1,527,127	+			-0.4
1,527,128	-			+0.5
1,527,140	+			-0.6
1,527,140	+			-1.2
1,527,141	-			-0.2
1,527,197	-	ABZR86_RS06940	0.17	-1.1
1,527,197	-	ABZR86_RS06940	0.17	-0.3
1,527,214	-	ABZR86_RS06940	0.21	-3.1
1,527,253	+	ABZR86_RS06940	0.31	-1.3
1,527,253	+	ABZR86_RS06940	0.31	-1.3
1,527,285	+	ABZR86_RS06940	0.39	-0.1
1,527,285	+	ABZR86_RS06940	0.39	-3.2
1,527,285	+	ABZR86_RS06940	0.39	-0.5
1,527,293	-	ABZR86_RS06940	0.41	-1.0
1,527,335	-	ABZR86_RS06940	0.51	-1.0
1,527,364	+	ABZR86_RS06940	0.58	-1.4
1,527,371	-	ABZR86_RS06940	0.60	-1.9
1,527,407	+	ABZR86_RS06940	0.69	-0.9
1,527,407	+	ABZR86_RS06940	0.69	+0.1
1,527,407	+	ABZR86_RS06940	0.69	-1.4
1,527,408	-	ABZR86_RS06940	0.69	-0.5
1,527,408	-	ABZR86_RS06940	0.69	+0.2
1,527,408	-	ABZR86_RS06940	0.69	-1.6
1,527,408	-	ABZR86_RS06940	0.69	-1.1
1,527,423	-	ABZR86_RS06940	0.73	-3.3
1,527,423	-	ABZR86_RS06940	0.73	-2.2
1,527,469	-	ABZR86_RS06940	0.84	-3.6
1,527,469	-	ABZR86_RS06940	0.84	-1.8
1,527,469	-	ABZR86_RS06940	0.84	-3.0
1,527,469	-	ABZR86_RS06940	0.84	-1.6
1,527,561	-			+0.1
1,527,561	-			+0.9
1,527,586	+			-0.1
1,527,604	+			-1.1
1,527,605	-			-1.8
1,527,667	+			-0.3
1,527,667	+			+0.8
1,527,668	-			-0.1
1,527,695	-			-0.9
1,527,729	+			+0.8
1,527,782	+			+1.3
1,527,919	-			-1.1
1,527,919	-			-0.0
1,527,919	-			-1.1
1,528,008	+			-1.8
1,528,008	+			-0.7
1,528,008	+			+0.1
1,528,008	+			-0.7
1,528,008	+			-0.7
1,528,008	+			-0.1
1,528,008	+			+0.9
1,528,008	+			+0.4
1,528,008	+			-0.4
1,528,008	+			-0.1
1,528,009	-			-0.9
1,528,009	-			-0.6
1,528,009	-			-1.0
1,528,009	-			-2.1
1,528,049	+	ABZR86_RS06945	0.11	+1.2
1,528,049	+	ABZR86_RS06945	0.11	+0.2
1,528,049	+	ABZR86_RS06945	0.11	+1.0
1,528,049	+	ABZR86_RS06945	0.11	+0.2
1,528,050	-	ABZR86_RS06945	0.11	-1.4
1,528,050	-	ABZR86_RS06945	0.11	-0.3
1,528,050	-	ABZR86_RS06945	0.11	-0.9
1,528,050	-	ABZR86_RS06945	0.11	-0.9
1,528,050	-	ABZR86_RS06945	0.11	+0.5
1,528,050	-	ABZR86_RS06945	0.11	-0.6
1,528,050	-	ABZR86_RS06945	0.11	+0.1
1,528,053	+	ABZR86_RS06945	0.11	-0.7
1,528,053	+	ABZR86_RS06945	0.11	-0.3
1,528,054	-	ABZR86_RS06945	0.11	+0.4
1,528,054	-	ABZR86_RS06945	0.11	-0.1
1,528,075	-	ABZR86_RS06945	0.11	+0.6
1,528,084	+	ABZR86_RS06945	0.11	-0.1
1,528,084	+	ABZR86_RS06945	0.11	-1.9
1,528,085	-	ABZR86_RS06945	0.11	-0.4
1,528,085	-	ABZR86_RS06945	0.11	+0.1
1,528,085	-	ABZR86_RS06945	0.11	-0.1
1,528,085	-	ABZR86_RS06945	0.11	-1.5
1,528,092	+	ABZR86_RS06945	0.12	-0.3
1,528,119	+	ABZR86_RS06945	0.12	-0.1
1,528,120	-	ABZR86_RS06945	0.12	+0.0
1,528,120	-	ABZR86_RS06945	0.12	-0.5
1,528,120	-	ABZR86_RS06945	0.12	+0.1
1,528,120	-	ABZR86_RS06945	0.12	+0.3
1,528,198	-	ABZR86_RS06945	0.14	+0.8
1,528,272	+	ABZR86_RS06945	0.15	+0.1
1,528,272	+	ABZR86_RS06945	0.15	-0.1
1,528,272	+	ABZR86_RS06945	0.15	-0.4
1,528,272	+	ABZR86_RS06945	0.15	-0.8
1,528,272	+	ABZR86_RS06945	0.15	-0.7
1,528,273	-	ABZR86_RS06945	0.15	-1.0
1,528,273	-	ABZR86_RS06945	0.15	-0.5
1,528,273	-	ABZR86_RS06945	0.15	+0.4
1,528,273	-	ABZR86_RS06945	0.15	+1.3
1,528,273	-	ABZR86_RS06945	0.15	-0.0
1,528,273	-	ABZR86_RS06945	0.15	-1.1
1,528,273	-	ABZR86_RS06945	0.15	+0.2
1,528,289	+	ABZR86_RS06945	0.16	-0.2
1,528,290	-	ABZR86_RS06945	0.16	+0.2
1,528,338	+	ABZR86_RS06945	0.17	+1.8
1,528,338	+	ABZR86_RS06945	0.17	-0.9
1,528,339	-	ABZR86_RS06945	0.17	-0.2
1,528,339	-	ABZR86_RS06945	0.17	+1.1
1,528,339	-	ABZR86_RS06945	0.17	+0.4
1,528,360	-	ABZR86_RS06945	0.17	+0.0
1,528,360	-	ABZR86_RS06945	0.17	-0.2
1,528,389	+	ABZR86_RS06945	0.18	-0.2
1,528,459	-	ABZR86_RS06945	0.19	+0.7
1,528,459	-	ABZR86_RS06945	0.19	+0.4
1,528,521	+	ABZR86_RS06945	0.21	-0.4
1,528,521	+	ABZR86_RS06945	0.21	-0.7

Or see this region's nucleotide sequence