Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04560 and ABZR86_RS04565 are separated by 76 nucleotides ABZR86_RS04565 and ABZR86_RS04570 are separated by 413 nucleotides ABZR86_RS04570 and ABZR86_RS04575 are separated by 342 nucleotides
ABZR86_RS04560: ABZR86_RS04560 - H-NS histone family protein, at 1,023,937 to 1,024,410
_RS04560
ABZR86_RS04565: ABZR86_RS04565 - hypothetical protein, at 1,024,487 to 1,024,798
_RS04565
ABZR86_RS04570: ABZR86_RS04570 - hypothetical protein, at 1,025,212 to 1,025,484
_RS04570
ABZR86_RS04575: ABZR86_RS04575 - SGNH/GDSL hydrolase family protein, at 1,025,827 to 1,027,065
_RS04575
Position (kb) 1025
1026 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1024.480 kb on + strand at 1024.480 kb on + strand at 1024.480 kb on + strand at 1024.480 kb on + strand at 1024.480 kb on + strand at 1024.480 kb on + strand at 1024.480 kb on + strand at 1024.481 kb on - strand at 1024.481 kb on - strand at 1024.481 kb on - strand at 1024.488 kb on + strand at 1024.488 kb on + strand at 1024.488 kb on + strand at 1024.488 kb on + strand at 1024.488 kb on + strand at 1024.489 kb on - strand at 1024.606 kb on + strand, within ABZR86_RS04565 at 1024.606 kb on + strand, within ABZR86_RS04565 at 1024.607 kb on - strand, within ABZR86_RS04565 at 1024.607 kb on - strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.608 kb on + strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.609 kb on - strand, within ABZR86_RS04565 at 1024.894 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.043 kb on + strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.044 kb on - strand at 1025.090 kb on - strand at 1025.090 kb on - strand at 1025.090 kb on - strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.100 kb on + strand at 1025.101 kb on - strand at 1025.101 kb on - strand at 1025.101 kb on - strand at 1025.101 kb on - strand at 1025.309 kb on + strand, within ABZR86_RS04570 at 1025.473 kb on + strand at 1025.473 kb on + strand at 1025.473 kb on + strand at 1025.474 kb on - strand at 1025.474 kb on - strand at 1025.500 kb on + strand at 1025.500 kb on + strand at 1025.500 kb on + strand at 1025.500 kb on + strand at 1025.501 kb on - strand at 1025.501 kb on - strand at 1025.501 kb on - strand at 1025.501 kb on - strand at 1025.501 kb on - strand at 1025.501 kb on - strand at 1025.501 kb on - strand at 1025.604 kb on + strand at 1025.748 kb on + strand at 1025.749 kb on - strand at 1025.749 kb on - strand at 1025.785 kb on + strand at 1025.785 kb on + strand at 1025.785 kb on + strand at 1025.786 kb on - strand at 1025.786 kb on - strand at 1025.786 kb on - strand at 1025.786 kb on - strand at 1025.787 kb on + strand at 1025.788 kb on - strand at 1026.061 kb on + strand, within ABZR86_RS04575 at 1026.062 kb on - strand, within ABZR86_RS04575 at 1026.197 kb on + strand, within ABZR86_RS04575 at 1026.197 kb on + strand, within ABZR86_RS04575 at 1026.198 kb on - strand, within ABZR86_RS04575 at 1026.198 kb on - strand, within ABZR86_RS04575 at 1026.198 kb on - strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.256 kb on + strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.257 kb on - strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.293 kb on + strand, within ABZR86_RS04575 at 1026.294 kb on - strand, within ABZR86_RS04575 at 1026.294 kb on - strand, within ABZR86_RS04575 at 1026.294 kb on - strand, within ABZR86_RS04575 at 1026.294 kb on - strand, within ABZR86_RS04575 at 1026.294 kb on - strand, within ABZR86_RS04575 at 1026.297 kb on + strand, within ABZR86_RS04575 at 1026.297 kb on + strand, within ABZR86_RS04575 at 1026.297 kb on + strand, within ABZR86_RS04575 at 1026.298 kb on - strand, within ABZR86_RS04575 at 1026.298 kb on - strand, within ABZR86_RS04575 at 1026.298 kb on - strand, within ABZR86_RS04575 at 1026.298 kb on - strand, within ABZR86_RS04575 at 1026.298 kb on - strand, within ABZR86_RS04575 at 1026.298 kb on - strand, within ABZR86_RS04575 at 1026.319 kb on + strand, within ABZR86_RS04575 at 1026.319 kb on + strand, within ABZR86_RS04575 at 1026.320 kb on - strand, within ABZR86_RS04575 at 1026.358 kb on + strand, within ABZR86_RS04575 at 1026.358 kb on + strand, within ABZR86_RS04575 at 1026.358 kb on + strand, within ABZR86_RS04575 at 1026.358 kb on + strand, within ABZR86_RS04575 at 1026.359 kb on - strand, within ABZR86_RS04575
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 1,024,480 + -0.0 1,024,480 + -0.0 1,024,480 + -0.8 1,024,480 + -0.3 1,024,480 + -0.7 1,024,480 + -0.2 1,024,480 + -0.2 1,024,481 - -0.1 1,024,481 - -1.5 1,024,481 - -0.3 1,024,488 + +0.3 1,024,488 + -0.4 1,024,488 + +1.5 1,024,488 + +1.9 1,024,488 + -0.1 1,024,489 - -1.7 1,024,606 + ABZR86_RS04565 0.38 -0.0 1,024,606 + ABZR86_RS04565 0.38 -0.3 1,024,607 - ABZR86_RS04565 0.38 +0.4 1,024,607 - ABZR86_RS04565 0.38 -0.4 1,024,608 + ABZR86_RS04565 0.39 -1.6 1,024,608 + ABZR86_RS04565 0.39 -1.2 1,024,608 + ABZR86_RS04565 0.39 -1.2 1,024,608 + ABZR86_RS04565 0.39 -0.1 1,024,608 + ABZR86_RS04565 0.39 -0.7 1,024,608 + ABZR86_RS04565 0.39 -0.6 1,024,608 + ABZR86_RS04565 0.39 -1.9 1,024,609 - ABZR86_RS04565 0.39 -0.2 1,024,609 - ABZR86_RS04565 0.39 -0.1 1,024,609 - ABZR86_RS04565 0.39 -1.2 1,024,609 - ABZR86_RS04565 0.39 -1.4 1,024,609 - ABZR86_RS04565 0.39 -1.3 1,024,609 - ABZR86_RS04565 0.39 -0.4 1,024,609 - ABZR86_RS04565 0.39 -0.5 1,024,609 - ABZR86_RS04565 0.39 +0.5 1,024,609 - ABZR86_RS04565 0.39 -0.3 1,024,609 - ABZR86_RS04565 0.39 +0.6 1,024,894 + -0.7 1,025,043 + +0.1 1,025,043 + +0.4 1,025,043 + -0.4 1,025,043 + -1.0 1,025,043 + +0.5 1,025,043 + -0.4 1,025,043 + -1.2 1,025,043 + -1.4 1,025,043 + -0.1 1,025,043 + +1.5 1,025,043 + -0.6 1,025,043 + -0.1 1,025,043 + +0.6 1,025,043 + +0.3 1,025,044 - -0.1 1,025,044 - -0.2 1,025,044 - -1.9 1,025,044 - -0.1 1,025,044 - +0.0 1,025,044 - -0.1 1,025,044 - +0.2 1,025,044 - +1.5 1,025,090 - -0.3 1,025,090 - -0.7 1,025,090 - -1.5 1,025,100 + -0.2 1,025,100 + -0.0 1,025,100 + -0.8 1,025,100 + -0.0 1,025,100 + -1.1 1,025,100 + -0.1 1,025,100 + +0.9 1,025,100 + -3.1 1,025,100 + +3.0 1,025,100 + -0.1 1,025,101 - -1.9 1,025,101 - +0.4 1,025,101 - +0.3 1,025,101 - +1.0 1,025,309 + ABZR86_RS04570 0.36 -0.7 1,025,473 + +0.3 1,025,473 + -1.3 1,025,473 + -0.7 1,025,474 - -0.6 1,025,474 - -0.5 1,025,500 + +0.8 1,025,500 + -0.0 1,025,500 + +0.7 1,025,500 + -0.4 1,025,501 - +0.4 1,025,501 - +0.3 1,025,501 - -3.1 1,025,501 - -0.5 1,025,501 - +0.3 1,025,501 - -0.1 1,025,501 - +1.0 1,025,604 + -0.7 1,025,748 + +0.4 1,025,749 - +1.0 1,025,749 - +2.5 1,025,785 + -0.6 1,025,785 + +0.3 1,025,785 + +0.4 1,025,786 - +0.8 1,025,786 - +0.5 1,025,786 - -0.9 1,025,786 - +2.1 1,025,787 + -0.5 1,025,788 - -0.6 1,026,061 + ABZR86_RS04575 0.19 +0.5 1,026,062 - ABZR86_RS04575 0.19 +0.1 1,026,197 + ABZR86_RS04575 0.30 -0.0 1,026,197 + ABZR86_RS04575 0.30 -0.6 1,026,198 - ABZR86_RS04575 0.30 +0.4 1,026,198 - ABZR86_RS04575 0.30 -0.2 1,026,198 - ABZR86_RS04575 0.30 -1.1 1,026,256 + ABZR86_RS04575 0.35 -0.6 1,026,256 + ABZR86_RS04575 0.35 +0.8 1,026,256 + ABZR86_RS04575 0.35 -0.6 1,026,256 + ABZR86_RS04575 0.35 -0.6 1,026,256 + ABZR86_RS04575 0.35 -0.0 1,026,256 + ABZR86_RS04575 0.35 +0.7 1,026,256 + ABZR86_RS04575 0.35 -0.3 1,026,256 + ABZR86_RS04575 0.35 +0.0 1,026,256 + ABZR86_RS04575 0.35 -0.0 1,026,257 - ABZR86_RS04575 0.35 -0.3 1,026,257 - ABZR86_RS04575 0.35 -0.0 1,026,257 - ABZR86_RS04575 0.35 -0.0 1,026,257 - ABZR86_RS04575 0.35 -0.6 1,026,257 - ABZR86_RS04575 0.35 +0.3 1,026,257 - ABZR86_RS04575 0.35 +0.4 1,026,257 - ABZR86_RS04575 0.35 +0.5 1,026,257 - ABZR86_RS04575 0.35 +0.6 1,026,257 - ABZR86_RS04575 0.35 -0.8 1,026,293 + ABZR86_RS04575 0.38 +0.0 1,026,293 + ABZR86_RS04575 0.38 -0.3 1,026,293 + ABZR86_RS04575 0.38 +0.2 1,026,293 + ABZR86_RS04575 0.38 -0.3 1,026,293 + ABZR86_RS04575 0.38 -1.1 1,026,293 + ABZR86_RS04575 0.38 +0.6 1,026,293 + ABZR86_RS04575 0.38 +0.7 1,026,293 + ABZR86_RS04575 0.38 -0.3 1,026,294 - ABZR86_RS04575 0.38 -1.1 1,026,294 - ABZR86_RS04575 0.38 +0.3 1,026,294 - ABZR86_RS04575 0.38 -0.6 1,026,294 - ABZR86_RS04575 0.38 +0.8 1,026,294 - ABZR86_RS04575 0.38 -1.1 1,026,297 + ABZR86_RS04575 0.38 -0.2 1,026,297 + ABZR86_RS04575 0.38 -0.6 1,026,297 + ABZR86_RS04575 0.38 -0.3 1,026,298 - ABZR86_RS04575 0.38 -1.6 1,026,298 - ABZR86_RS04575 0.38 +0.2 1,026,298 - ABZR86_RS04575 0.38 +0.1 1,026,298 - ABZR86_RS04575 0.38 -1.9 1,026,298 - ABZR86_RS04575 0.38 -0.2 1,026,298 - ABZR86_RS04575 0.38 +0.5 1,026,319 + ABZR86_RS04575 0.40 +0.1 1,026,319 + ABZR86_RS04575 0.40 +0.1 1,026,320 - ABZR86_RS04575 0.40 -0.4 1,026,358 + ABZR86_RS04575 0.43 -0.2 1,026,358 + ABZR86_RS04575 0.43 -0.2 1,026,358 + ABZR86_RS04575 0.43 +0.2 1,026,358 + ABZR86_RS04575 0.43 +0.4 1,026,359 - ABZR86_RS04575 0.43 +0.7
Or see this region's nucleotide sequence