Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04440

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04430 and ABZR86_RS04435 overlap by 4 nucleotidesABZR86_RS04435 and ABZR86_RS04440 overlap by 4 nucleotidesABZR86_RS04440 and ABZR86_RS04445 overlap by 4 nucleotidesABZR86_RS04445 and ABZR86_RS04450 overlap by 4 nucleotides ABZR86_RS04430: ABZR86_RS04430 - FixH family protein, at 992,012 to 992,497 _RS04430 ABZR86_RS04435: ABZR86_RS04435 - cytochrome-c oxidase, cbb3-type subunit III, at 992,494 to 993,411 _RS04435 ABZR86_RS04440: ABZR86_RS04440 - cbb3-type cytochrome c oxidase subunit 3, at 993,408 to 993,587 _RS04440 ABZR86_RS04445: ABZR86_RS04445 - cytochrome-c oxidase, cbb3-type subunit II, at 993,584 to 994,270 _RS04445 ABZR86_RS04450: ABZR86_RS04450 - cytochrome-c oxidase, cbb3-type subunit I, at 994,267 to 995,709 _RS04450 Position (kb) 993 994Strain fitness (log2 ratio) -2 -1 0 1 2at 992.669 kb on + strand, within ABZR86_RS04435at 992.669 kb on + strand, within ABZR86_RS04435at 992.669 kb on + strand, within ABZR86_RS04435at 992.669 kb on + strand, within ABZR86_RS04435at 992.670 kb on - strand, within ABZR86_RS04435at 992.670 kb on - strand, within ABZR86_RS04435at 992.822 kb on + strand, within ABZR86_RS04435at 992.822 kb on + strand, within ABZR86_RS04435at 992.822 kb on + strand, within ABZR86_RS04435at 992.822 kb on + strand, within ABZR86_RS04435at 992.822 kb on + strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 992.823 kb on - strand, within ABZR86_RS04435at 993.021 kb on - strand, within ABZR86_RS04435at 993.021 kb on - strand, within ABZR86_RS04435at 993.031 kb on + strand, within ABZR86_RS04435at 993.031 kb on + strand, within ABZR86_RS04435at 993.031 kb on + strand, within ABZR86_RS04435at 993.031 kb on + strand, within ABZR86_RS04435at 993.031 kb on + strand, within ABZR86_RS04435at 993.032 kb on - strand, within ABZR86_RS04435at 993.032 kb on - strand, within ABZR86_RS04435at 993.062 kb on + strand, within ABZR86_RS04435at 993.063 kb on - strand, within ABZR86_RS04435at 993.063 kb on - strand, within ABZR86_RS04435at 993.063 kb on - strand, within ABZR86_RS04435at 993.191 kb on + strand, within ABZR86_RS04435at 993.192 kb on - strand, within ABZR86_RS04435at 993.192 kb on - strand, within ABZR86_RS04435at 993.335 kb on + strandat 993.335 kb on + strandat 993.335 kb on + strandat 993.335 kb on + strandat 993.335 kb on + strandat 993.335 kb on + strandat 993.335 kb on + strandat 993.336 kb on - strandat 993.336 kb on - strandat 993.336 kb on - strandat 993.336 kb on - strandat 993.336 kb on - strandat 993.341 kb on + strandat 993.341 kb on + strandat 993.341 kb on + strandat 993.341 kb on + strandat 993.341 kb on + strandat 993.342 kb on - strandat 993.342 kb on - strandat 993.342 kb on - strandat 993.342 kb on - strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.389 kb on + strandat 993.390 kb on - strandat 993.390 kb on - strandat 993.390 kb on - strandat 993.390 kb on - strandat 993.390 kb on - strandat 993.390 kb on - strandat 993.390 kb on - strandat 993.559 kb on + strand, within ABZR86_RS04440at 993.559 kb on + strand, within ABZR86_RS04440at 993.559 kb on + strand, within ABZR86_RS04440at 993.560 kb on - strand, within ABZR86_RS04440at 993.560 kb on - strand, within ABZR86_RS04440at 993.660 kb on + strand, within ABZR86_RS04445at 993.660 kb on + strand, within ABZR86_RS04445at 993.660 kb on + strand, within ABZR86_RS04445at 993.732 kb on + strand, within ABZR86_RS04445at 993.813 kb on + strand, within ABZR86_RS04445at 993.846 kb on - strand, within ABZR86_RS04445at 993.891 kb on + strand, within ABZR86_RS04445at 993.891 kb on + strand, within ABZR86_RS04445at 993.891 kb on + strand, within ABZR86_RS04445at 993.891 kb on + strand, within ABZR86_RS04445at 993.892 kb on - strand, within ABZR86_RS04445at 993.892 kb on - strand, within ABZR86_RS04445at 993.957 kb on + strand, within ABZR86_RS04445at 993.957 kb on + strand, within ABZR86_RS04445at 993.957 kb on + strand, within ABZR86_RS04445at 993.958 kb on - strand, within ABZR86_RS04445at 993.958 kb on - strand, within ABZR86_RS04445at 993.958 kb on - strand, within ABZR86_RS04445at 993.982 kb on - strand, within ABZR86_RS04445at 993.990 kb on + strand, within ABZR86_RS04445at 994.041 kb on + strand, within ABZR86_RS04445at 994.042 kb on - strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.059 kb on + strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.060 kb on - strand, within ABZR86_RS04445at 994.190 kb on + strand, within ABZR86_RS04445at 994.230 kb on + strandat 994.230 kb on + strandat 994.230 kb on + strandat 994.231 kb on - strandat 994.310 kb on + strandat 994.310 kb on + strandat 994.311 kb on - strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.403 kb on + strandat 994.404 kb on - strandat 994.404 kb on - strandat 994.404 kb on - strandat 994.404 kb on - strandat 994.442 kb on + strand, within ABZR86_RS04450at 994.442 kb on + strand, within ABZR86_RS04450at 994.442 kb on + strand, within ABZR86_RS04450at 994.443 kb on - strand, within ABZR86_RS04450at 994.443 kb on - strand, within ABZR86_RS04450at 994.443 kb on - strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.520 kb on + strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450at 994.521 kb on - strand, within ABZR86_RS04450

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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992,669 + ABZR86_RS04435 0.19 +0.9
992,669 + ABZR86_RS04435 0.19 -0.3
992,669 + ABZR86_RS04435 0.19 +0.4
992,669 + ABZR86_RS04435 0.19 +0.1
992,670 - ABZR86_RS04435 0.19 +0.6
992,670 - ABZR86_RS04435 0.19 -0.7
992,822 + ABZR86_RS04435 0.36 +0.1
992,822 + ABZR86_RS04435 0.36 -1.4
992,822 + ABZR86_RS04435 0.36 -0.7
992,822 + ABZR86_RS04435 0.36 +1.9
992,822 + ABZR86_RS04435 0.36 +0.0
992,823 - ABZR86_RS04435 0.36 -0.4
992,823 - ABZR86_RS04435 0.36 -0.7
992,823 - ABZR86_RS04435 0.36 -0.1
992,823 - ABZR86_RS04435 0.36 -0.9
992,823 - ABZR86_RS04435 0.36 +0.4
992,823 - ABZR86_RS04435 0.36 +0.3
992,823 - ABZR86_RS04435 0.36 -0.1
992,823 - ABZR86_RS04435 0.36 -1.0
993,021 - ABZR86_RS04435 0.57 +0.4
993,021 - ABZR86_RS04435 0.57 +0.7
993,031 + ABZR86_RS04435 0.58 -0.5
993,031 + ABZR86_RS04435 0.58 +0.3
993,031 + ABZR86_RS04435 0.58 -0.8
993,031 + ABZR86_RS04435 0.58 -1.2
993,031 + ABZR86_RS04435 0.58 +0.2
993,032 - ABZR86_RS04435 0.59 +2.2
993,032 - ABZR86_RS04435 0.59 +0.7
993,062 + ABZR86_RS04435 0.62 -1.2
993,063 - ABZR86_RS04435 0.62 +0.1
993,063 - ABZR86_RS04435 0.62 -0.0
993,063 - ABZR86_RS04435 0.62 -0.1
993,191 + ABZR86_RS04435 0.76 +0.1
993,192 - ABZR86_RS04435 0.76 -0.7
993,192 - ABZR86_RS04435 0.76 -0.0
993,335 + -0.2
993,335 + -0.0
993,335 + +0.4
993,335 + +0.2
993,335 + -1.5
993,335 + -0.4
993,335 + +0.6
993,336 - -1.5
993,336 - +0.6
993,336 - -0.6
993,336 - -0.7
993,336 - +0.8
993,341 + -0.8
993,341 + +0.5
993,341 + -0.1
993,341 + -0.0
993,341 + +0.5
993,342 - +0.2
993,342 - -0.2
993,342 - -1.2
993,342 - +0.5
993,389 + +0.2
993,389 + -0.1
993,389 + -0.4
993,389 + +0.2
993,389 + -0.3
993,389 + -0.1
993,389 + +0.5
993,389 + +0.1
993,390 - +0.5
993,390 - -2.4
993,390 - -1.6
993,390 - -0.8
993,390 - -0.3
993,390 - +0.7
993,390 - +0.8
993,559 + ABZR86_RS04440 0.84 -0.9
993,559 + ABZR86_RS04440 0.84 -0.6
993,559 + ABZR86_RS04440 0.84 -1.9
993,560 - ABZR86_RS04440 0.84 -1.2
993,560 - ABZR86_RS04440 0.84 -1.1
993,660 + ABZR86_RS04445 0.11 +0.7
993,660 + ABZR86_RS04445 0.11 +0.4
993,660 + ABZR86_RS04445 0.11 -1.3
993,732 + ABZR86_RS04445 0.22 -0.0
993,813 + ABZR86_RS04445 0.33 -0.3
993,846 - ABZR86_RS04445 0.38 -0.7
993,891 + ABZR86_RS04445 0.45 -0.0
993,891 + ABZR86_RS04445 0.45 +0.0
993,891 + ABZR86_RS04445 0.45 -1.1
993,891 + ABZR86_RS04445 0.45 -0.8
993,892 - ABZR86_RS04445 0.45 -0.7
993,892 - ABZR86_RS04445 0.45 -1.6
993,957 + ABZR86_RS04445 0.54 -0.0
993,957 + ABZR86_RS04445 0.54 -0.4
993,957 + ABZR86_RS04445 0.54 -0.5
993,958 - ABZR86_RS04445 0.54 -0.2
993,958 - ABZR86_RS04445 0.54 -0.4
993,958 - ABZR86_RS04445 0.54 +0.5
993,982 - ABZR86_RS04445 0.58 +0.0
993,990 + ABZR86_RS04445 0.59 +0.4
994,041 + ABZR86_RS04445 0.67 +0.3
994,042 - ABZR86_RS04445 0.67 -0.8
994,059 + ABZR86_RS04445 0.69 -0.9
994,059 + ABZR86_RS04445 0.69 +0.6
994,059 + ABZR86_RS04445 0.69 +0.8
994,059 + ABZR86_RS04445 0.69 -0.4
994,059 + ABZR86_RS04445 0.69 -0.2
994,059 + ABZR86_RS04445 0.69 +0.4
994,059 + ABZR86_RS04445 0.69 -0.3
994,059 + ABZR86_RS04445 0.69 +0.1
994,059 + ABZR86_RS04445 0.69 -0.1
994,059 + ABZR86_RS04445 0.69 +0.5
994,059 + ABZR86_RS04445 0.69 -0.7
994,059 + ABZR86_RS04445 0.69 +1.6
994,059 + ABZR86_RS04445 0.69 -1.2
994,060 - ABZR86_RS04445 0.69 +1.7
994,060 - ABZR86_RS04445 0.69 -0.1
994,060 - ABZR86_RS04445 0.69 +0.8
994,060 - ABZR86_RS04445 0.69 -0.7
994,060 - ABZR86_RS04445 0.69 +0.7
994,060 - ABZR86_RS04445 0.69 -1.7
994,060 - ABZR86_RS04445 0.69 +0.8
994,060 - ABZR86_RS04445 0.69 +1.0
994,060 - ABZR86_RS04445 0.69 +0.5
994,060 - ABZR86_RS04445 0.69 +1.8
994,060 - ABZR86_RS04445 0.69 +0.2
994,060 - ABZR86_RS04445 0.69 -0.7
994,060 - ABZR86_RS04445 0.69 -1.6
994,060 - ABZR86_RS04445 0.69 -0.4
994,190 + ABZR86_RS04445 0.88 +0.9
994,230 + -0.5
994,230 + +0.5
994,230 + -0.8
994,231 - +0.8
994,310 + -0.8
994,310 + -1.6
994,311 - +0.4
994,403 + +0.7
994,403 + -0.2
994,403 + -0.5
994,403 + +0.7
994,403 + -0.7
994,403 + +0.1
994,403 + +1.2
994,403 + +0.9
994,403 + +0.2
994,403 + +0.1
994,404 - -0.3
994,404 - -0.9
994,404 - +0.3
994,404 - -0.9
994,442 + ABZR86_RS04450 0.12 +0.8
994,442 + ABZR86_RS04450 0.12 -0.9
994,442 + ABZR86_RS04450 0.12 +0.4
994,443 - ABZR86_RS04450 0.12 +0.7
994,443 - ABZR86_RS04450 0.12 +0.1
994,443 - ABZR86_RS04450 0.12 +0.9
994,520 + ABZR86_RS04450 0.18 -1.0
994,520 + ABZR86_RS04450 0.18 +0.1
994,520 + ABZR86_RS04450 0.18 +0.0
994,520 + ABZR86_RS04450 0.18 +1.0
994,520 + ABZR86_RS04450 0.18 -0.0
994,520 + ABZR86_RS04450 0.18 -0.8
994,520 + ABZR86_RS04450 0.18 -2.2
994,520 + ABZR86_RS04450 0.18 +0.1
994,520 + ABZR86_RS04450 0.18 -0.5
994,520 + ABZR86_RS04450 0.18 +0.2
994,520 + ABZR86_RS04450 0.18 -1.9
994,520 + ABZR86_RS04450 0.18 +0.2
994,521 - ABZR86_RS04450 0.18 -0.3
994,521 - ABZR86_RS04450 0.18 -0.8
994,521 - ABZR86_RS04450 0.18 +0.8
994,521 - ABZR86_RS04450 0.18 +0.6
994,521 - ABZR86_RS04450 0.18 +0.0
994,521 - ABZR86_RS04450 0.18 -0.0
994,521 - ABZR86_RS04450 0.18 +0.1
994,521 - ABZR86_RS04450 0.18 -0.1
994,521 - ABZR86_RS04450 0.18 -0.4
994,521 - ABZR86_RS04450 0.18 -0.0
994,521 - ABZR86_RS04450 0.18 +0.3
994,521 - ABZR86_RS04450 0.18 +0.5
994,521 - ABZR86_RS04450 0.18 -0.5
994,521 - ABZR86_RS04450 0.18 +1.3
994,521 - ABZR86_RS04450 0.18 -0.2
994,521 - ABZR86_RS04450 0.18 +0.1

Or see this region's nucleotide sequence