Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04410 and ABZR86_RS04415 are separated by 117 nucleotides ABZR86_RS04415 and ABZR86_RS04420 overlap by 4 nucleotides ABZR86_RS04420 and ABZR86_RS04425 overlap by 4 nucleotides
ABZR86_RS04410: ABZR86_RS04410 - CBS domain-containing protein, at 987,884 to 988,600
_RS04410
ABZR86_RS04415: ABZR86_RS04415 - sulfite exporter TauE/SafE family protein, at 988,718 to 989,437
_RS04415
ABZR86_RS04420: ABZR86_RS04420 - cbb3-type cytochrome oxidase assembly protein CcoS, at 989,434 to 989,610
_RS04420
ABZR86_RS04425: ABZR86_RS04425 - heavy metal translocating P-type ATPase, at 989,607 to 992,015
_RS04425
Position (kb) 989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 988.450 kb on - strand, within ABZR86_RS04410 at 988.527 kb on + strand, within ABZR86_RS04410 at 988.528 kb on - strand, within ABZR86_RS04410 at 988.528 kb on - strand, within ABZR86_RS04410 at 988.528 kb on - strand, within ABZR86_RS04410 at 988.549 kb on + strand at 988.549 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.598 kb on + strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.599 kb on - strand at 988.631 kb on + strand at 988.684 kb on + strand at 988.684 kb on + strand at 988.685 kb on - strand at 988.685 kb on - strand at 988.685 kb on - strand at 988.685 kb on - strand at 988.719 kb on + strand at 988.719 kb on + strand at 988.719 kb on + strand at 988.720 kb on - strand at 988.720 kb on - strand at 988.720 kb on - strand at 988.720 kb on - strand at 988.720 kb on - strand at 988.720 kb on - strand at 988.720 kb on - strand at 988.980 kb on + strand, within ABZR86_RS04415 at 988.980 kb on + strand, within ABZR86_RS04415 at 988.980 kb on + strand, within ABZR86_RS04415 at 988.981 kb on - strand, within ABZR86_RS04415 at 988.981 kb on - strand, within ABZR86_RS04415 at 989.259 kb on + strand, within ABZR86_RS04415 at 989.260 kb on - strand, within ABZR86_RS04415 at 989.283 kb on + strand, within ABZR86_RS04415 at 989.284 kb on - strand, within ABZR86_RS04415 at 989.284 kb on - strand, within ABZR86_RS04415 at 989.284 kb on - strand, within ABZR86_RS04415 at 989.495 kb on - strand, within ABZR86_RS04420 at 989.495 kb on - strand, within ABZR86_RS04420 at 989.495 kb on - strand, within ABZR86_RS04420 at 989.776 kb on + strand at 989.776 kb on + strand at 989.776 kb on + strand at 989.776 kb on + strand at 989.776 kb on + strand at 989.776 kb on + strand at 989.776 kb on + strand at 989.777 kb on - strand at 989.777 kb on - strand at 989.777 kb on - strand at 989.777 kb on - strand at 989.777 kb on - strand at 989.777 kb on - strand at 989.871 kb on - strand, within ABZR86_RS04425 at 990.120 kb on + strand, within ABZR86_RS04425 at 990.120 kb on + strand, within ABZR86_RS04425 at 990.121 kb on - strand, within ABZR86_RS04425 at 990.121 kb on - strand, within ABZR86_RS04425 at 990.121 kb on - strand, within ABZR86_RS04425 at 990.121 kb on - strand, within ABZR86_RS04425
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 988,450 - ABZR86_RS04410 0.79 +0.4 988,527 + ABZR86_RS04410 0.90 -0.2 988,528 - ABZR86_RS04410 0.90 -0.8 988,528 - ABZR86_RS04410 0.90 +0.4 988,528 - ABZR86_RS04410 0.90 -0.7 988,549 + -0.3 988,549 + -0.2 988,598 + -0.1 988,598 + -1.9 988,598 + -0.3 988,598 + -2.3 988,598 + -0.8 988,598 + -1.2 988,598 + +0.5 988,598 + -0.9 988,598 + +0.5 988,598 + -1.1 988,598 + +0.3 988,598 + +0.5 988,598 + -0.4 988,598 + +0.3 988,598 + -2.9 988,598 + +0.7 988,599 - +1.0 988,599 - -1.1 988,599 - -0.0 988,599 - -0.8 988,599 - -0.1 988,599 - -1.0 988,599 - -1.4 988,599 - -0.4 988,599 - -0.5 988,599 - -0.6 988,599 - -0.4 988,599 - +0.1 988,599 - +0.9 988,599 - +0.7 988,599 - -1.4 988,599 - -0.7 988,599 - +0.2 988,599 - +0.6 988,599 - -1.2 988,599 - +0.1 988,599 - +0.2 988,599 - -1.6 988,599 - +0.1 988,631 + -0.5 988,684 + +0.2 988,684 + -0.5 988,685 - -0.6 988,685 - +0.4 988,685 - -0.3 988,685 - -0.0 988,719 + +0.0 988,719 + -0.8 988,719 + +0.6 988,720 - +0.8 988,720 - +1.8 988,720 - -0.3 988,720 - -0.6 988,720 - +0.2 988,720 - -2.3 988,720 - +0.3 988,980 + ABZR86_RS04415 0.36 +1.5 988,980 + ABZR86_RS04415 0.36 +0.0 988,980 + ABZR86_RS04415 0.36 -0.8 988,981 - ABZR86_RS04415 0.37 +0.7 988,981 - ABZR86_RS04415 0.37 +0.2 989,259 + ABZR86_RS04415 0.75 +0.1 989,260 - ABZR86_RS04415 0.75 +0.4 989,283 + ABZR86_RS04415 0.78 -0.2 989,284 - ABZR86_RS04415 0.79 -0.5 989,284 - ABZR86_RS04415 0.79 +1.6 989,284 - ABZR86_RS04415 0.79 -0.1 989,495 - ABZR86_RS04420 0.34 -1.4 989,495 - ABZR86_RS04420 0.34 -1.5 989,495 - ABZR86_RS04420 0.34 +0.2 989,776 + -0.6 989,776 + -0.1 989,776 + -0.0 989,776 + +0.9 989,776 + +0.8 989,776 + -1.1 989,776 + +0.8 989,777 - +0.1 989,777 - +1.5 989,777 - +0.5 989,777 - +0.2 989,777 - +0.0 989,777 - -0.9 989,871 - ABZR86_RS04425 0.11 -0.9 990,120 + ABZR86_RS04425 0.21 -2.0 990,120 + ABZR86_RS04425 0.21 -2.0 990,121 - ABZR86_RS04425 0.21 +2.5 990,121 - ABZR86_RS04425 0.21 +0.5 990,121 - ABZR86_RS04425 0.21 -0.0 990,121 - ABZR86_RS04425 0.21 +0.3
Or see this region's nucleotide sequence