Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03725 and ABZR86_RS03730 are separated by 48 nucleotides ABZR86_RS03730 and ABZR86_RS03735 are separated by 4 nucleotides ABZR86_RS03735 and ABZR86_RS03740 are separated by 108 nucleotides ABZR86_RS03740 and ABZR86_RS03745 are separated by 134 nucleotides
ABZR86_RS03725: ABZR86_RS03725 - alpha/beta fold hydrolase, at 813,651 to 815,540
_RS03725
ABZR86_RS03730: ABZR86_RS03730 - VOC family protein, at 815,589 to 815,798
_RS03730
ABZR86_RS03735: ABZR86_RS03735 - DUF4199 domain-containing protein, at 815,803 to 816,339
_RS03735
ABZR86_RS03740: ABZR86_RS03740 - response regulator transcription factor, at 816,448 to 816,861
_RS03740
ABZR86_RS03745: ABZR86_RS03745 - nuclear transport factor 2 family protein, at 816,996 to 817,508
_RS03745
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 814.926 kb on - strand, within ABZR86_RS03725 at 815.053 kb on - strand, within ABZR86_RS03725 at 815.053 kb on - strand, within ABZR86_RS03725 at 815.352 kb on + strand at 815.353 kb on - strand at 815.353 kb on - strand at 815.355 kb on - strand at 815.400 kb on + strand at 815.400 kb on + strand at 815.400 kb on + strand at 815.401 kb on - strand at 815.401 kb on - strand at 815.401 kb on - strand at 815.501 kb on - strand at 815.513 kb on + strand at 815.513 kb on + strand at 815.514 kb on - strand at 815.772 kb on + strand, within ABZR86_RS03730 at 815.772 kb on + strand, within ABZR86_RS03730 at 815.773 kb on - strand, within ABZR86_RS03730 at 815.913 kb on - strand, within ABZR86_RS03735 at 815.927 kb on + strand, within ABZR86_RS03735 at 816.024 kb on - strand, within ABZR86_RS03735 at 816.080 kb on + strand, within ABZR86_RS03735 at 816.080 kb on + strand, within ABZR86_RS03735 at 816.080 kb on + strand, within ABZR86_RS03735 at 816.080 kb on + strand, within ABZR86_RS03735 at 816.081 kb on - strand, within ABZR86_RS03735 at 816.218 kb on + strand, within ABZR86_RS03735 at 816.236 kb on + strand, within ABZR86_RS03735 at 816.236 kb on + strand, within ABZR86_RS03735 at 816.237 kb on - strand, within ABZR86_RS03735 at 816.237 kb on - strand, within ABZR86_RS03735 at 816.317 kb on + strand at 816.342 kb on + strand at 816.343 kb on - strand at 816.343 kb on - strand at 816.614 kb on - strand, within ABZR86_RS03740 at 816.614 kb on - strand, within ABZR86_RS03740 at 816.614 kb on - strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.755 kb on + strand, within ABZR86_RS03740 at 816.756 kb on - strand, within ABZR86_RS03740 at 816.756 kb on - strand, within ABZR86_RS03740 at 816.756 kb on - strand, within ABZR86_RS03740 at 816.756 kb on - strand, within ABZR86_RS03740 at 816.756 kb on - strand, within ABZR86_RS03740 at 816.791 kb on + strand, within ABZR86_RS03740 at 816.792 kb on - strand, within ABZR86_RS03740 at 816.792 kb on - strand, within ABZR86_RS03740 at 816.897 kb on - strand at 816.897 kb on - strand at 816.906 kb on - strand at 816.968 kb on + strand at 816.968 kb on + strand at 816.968 kb on + strand at 816.968 kb on + strand at 816.968 kb on + strand at 817.058 kb on + strand, within ABZR86_RS03745 at 817.058 kb on + strand, within ABZR86_RS03745 at 817.059 kb on - strand, within ABZR86_RS03745 at 817.069 kb on + strand, within ABZR86_RS03745 at 817.070 kb on - strand, within ABZR86_RS03745 at 817.070 kb on - strand, within ABZR86_RS03745 at 817.137 kb on + strand, within ABZR86_RS03745 at 817.138 kb on - strand, within ABZR86_RS03745 at 817.239 kb on + strand, within ABZR86_RS03745 at 817.335 kb on + strand, within ABZR86_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 814,926 - ABZR86_RS03725 0.67 +0.4 815,053 - ABZR86_RS03725 0.74 -0.0 815,053 - ABZR86_RS03725 0.74 -0.3 815,352 + -0.2 815,353 - -0.1 815,353 - -0.0 815,355 - +0.1 815,400 + -0.9 815,400 + +0.3 815,400 + -1.0 815,401 - -0.1 815,401 - -0.3 815,401 - +0.2 815,501 - +0.4 815,513 + -0.4 815,513 + -1.1 815,514 - +0.3 815,772 + ABZR86_RS03730 0.87 -1.3 815,772 + ABZR86_RS03730 0.87 +0.7 815,773 - ABZR86_RS03730 0.88 -1.2 815,913 - ABZR86_RS03735 0.20 -0.8 815,927 + ABZR86_RS03735 0.23 -0.3 816,024 - ABZR86_RS03735 0.41 +0.3 816,080 + ABZR86_RS03735 0.52 +1.2 816,080 + ABZR86_RS03735 0.52 -1.0 816,080 + ABZR86_RS03735 0.52 -0.7 816,080 + ABZR86_RS03735 0.52 -1.5 816,081 - ABZR86_RS03735 0.52 +0.3 816,218 + ABZR86_RS03735 0.77 -0.4 816,236 + ABZR86_RS03735 0.81 +1.2 816,236 + ABZR86_RS03735 0.81 -1.8 816,237 - ABZR86_RS03735 0.81 -1.0 816,237 - ABZR86_RS03735 0.81 -1.1 816,317 + +0.0 816,342 + -0.9 816,343 - -0.3 816,343 - -0.2 816,614 - ABZR86_RS03740 0.40 -0.5 816,614 - ABZR86_RS03740 0.40 -1.2 816,614 - ABZR86_RS03740 0.40 +0.1 816,755 + ABZR86_RS03740 0.74 -1.6 816,755 + ABZR86_RS03740 0.74 +0.4 816,755 + ABZR86_RS03740 0.74 -1.1 816,755 + ABZR86_RS03740 0.74 +0.1 816,755 + ABZR86_RS03740 0.74 +0.5 816,755 + ABZR86_RS03740 0.74 -0.4 816,755 + ABZR86_RS03740 0.74 +0.3 816,755 + ABZR86_RS03740 0.74 -0.7 816,756 - ABZR86_RS03740 0.74 -0.4 816,756 - ABZR86_RS03740 0.74 -1.2 816,756 - ABZR86_RS03740 0.74 -0.9 816,756 - ABZR86_RS03740 0.74 -2.8 816,756 - ABZR86_RS03740 0.74 -0.6 816,791 + ABZR86_RS03740 0.83 +0.8 816,792 - ABZR86_RS03740 0.83 -0.1 816,792 - ABZR86_RS03740 0.83 -0.9 816,897 - -0.7 816,897 - +0.7 816,906 - -0.1 816,968 + +0.3 816,968 + +0.5 816,968 + +0.2 816,968 + +0.2 816,968 + +0.7 817,058 + ABZR86_RS03745 0.12 +1.0 817,058 + ABZR86_RS03745 0.12 -0.9 817,059 - ABZR86_RS03745 0.12 -1.0 817,069 + ABZR86_RS03745 0.14 +1.5 817,070 - ABZR86_RS03745 0.14 +0.0 817,070 - ABZR86_RS03745 0.14 +0.6 817,137 + ABZR86_RS03745 0.27 +0.3 817,138 - ABZR86_RS03745 0.28 +0.4 817,239 + ABZR86_RS03745 0.47 +0.6 817,335 + ABZR86_RS03745 0.66 +0.5
Or see this region's nucleotide sequence