Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02790 and ABZR86_RS02795 are separated by 4 nucleotides ABZR86_RS02795 and ABZR86_RS02800 overlap by 4 nucleotides ABZR86_RS02800 and ABZR86_RS02805 are separated by 92 nucleotides ABZR86_RS02805 and ABZR86_RS02810 are separated by 156 nucleotides ABZR86_RS02810 and ABZR86_RS02815 are separated by 108 nucleotides
ABZR86_RS02790: ABZR86_RS02790 - ATP-binding cassette domain-containing protein, at 562,857 to 564,755
_RS02790
ABZR86_RS02795: ABZR86_RS02795 - phosphoglycerate mutase, at 564,760 to 565,674
_RS02795
ABZR86_RS02800: ABZR86_RS02800 - single-stranded-DNA-specific exonuclease RecJ, at 565,671 to 567,389
_RS02800
ABZR86_RS02805: ABZR86_RS02805 - STAS/SEC14 domain-containing protein, at 567,482 to 567,844
_RS02805
ABZR86_RS02810: ABZR86_RS02810 - hypothetical protein, at 568,001 to 568,129
_RS02810
ABZR86_RS02815: ABZR86_RS02815 - asparagine synthase B, at 568,238 to 569,917
_RS02815
Position (kb) 565
566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 564.735 kb on + strand at 564.735 kb on + strand at 564.735 kb on + strand at 564.902 kb on - strand, within ABZR86_RS02795 at 565.761 kb on + strand at 565.761 kb on + strand at 565.761 kb on + strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.762 kb on - strand at 565.911 kb on + strand, within ABZR86_RS02800 at 565.911 kb on + strand, within ABZR86_RS02800 at 565.987 kb on - strand, within ABZR86_RS02800 at 566.016 kb on + strand, within ABZR86_RS02800 at 566.259 kb on + strand, within ABZR86_RS02800 at 566.259 kb on + strand, within ABZR86_RS02800 at 566.259 kb on + strand, within ABZR86_RS02800 at 566.259 kb on + strand, within ABZR86_RS02800 at 566.259 kb on + strand, within ABZR86_RS02800 at 566.260 kb on - strand, within ABZR86_RS02800 at 566.260 kb on - strand, within ABZR86_RS02800 at 566.260 kb on - strand, within ABZR86_RS02800 at 566.260 kb on - strand, within ABZR86_RS02800 at 566.388 kb on + strand, within ABZR86_RS02800 at 566.388 kb on + strand, within ABZR86_RS02800 at 566.388 kb on + strand, within ABZR86_RS02800 at 566.388 kb on + strand, within ABZR86_RS02800 at 566.389 kb on - strand, within ABZR86_RS02800 at 566.389 kb on - strand, within ABZR86_RS02800 at 566.389 kb on - strand, within ABZR86_RS02800 at 566.885 kb on + strand, within ABZR86_RS02800 at 567.063 kb on + strand, within ABZR86_RS02800 at 567.063 kb on + strand, within ABZR86_RS02800 at 567.063 kb on + strand, within ABZR86_RS02800 at 567.063 kb on + strand, within ABZR86_RS02800 at 567.064 kb on - strand, within ABZR86_RS02800 at 567.064 kb on - strand, within ABZR86_RS02800 at 567.066 kb on - strand, within ABZR86_RS02800 at 567.276 kb on + strand at 567.277 kb on - strand at 567.277 kb on - strand at 567.416 kb on + strand at 567.416 kb on + strand at 567.416 kb on + strand at 567.417 kb on - strand at 567.417 kb on - strand at 567.417 kb on - strand at 567.449 kb on - strand at 567.558 kb on - strand, within ABZR86_RS02805 at 567.797 kb on + strand, within ABZR86_RS02805 at 567.798 kb on - strand, within ABZR86_RS02805 at 567.845 kb on + strand at 567.845 kb on + strand at 567.845 kb on + strand at 567.845 kb on + strand at 567.845 kb on + strand at 567.845 kb on + strand at 567.845 kb on + strand at 567.845 kb on + strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.846 kb on - strand at 567.849 kb on + strand at 567.849 kb on + strand at 567.849 kb on + strand at 567.849 kb on + strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.850 kb on - strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.935 kb on + strand at 567.936 kb on - strand at 567.936 kb on - strand at 567.991 kb on - strand at 568.044 kb on - strand, within ABZR86_RS02810 at 568.081 kb on + strand, within ABZR86_RS02810 at 568.081 kb on + strand, within ABZR86_RS02810 at 568.082 kb on - strand, within ABZR86_RS02810 at 568.094 kb on - strand, within ABZR86_RS02810 at 568.094 kb on - strand, within ABZR86_RS02810 at 568.094 kb on - strand, within ABZR86_RS02810 at 568.127 kb on + strand at 568.127 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.215 kb on + strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand at 568.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 564,735 + -1.7 564,735 + -0.5 564,735 + +0.0 564,902 - ABZR86_RS02795 0.16 +0.1 565,761 + +0.1 565,761 + -0.9 565,761 + +1.2 565,762 - -1.3 565,762 - +0.0 565,762 - +0.1 565,762 - -0.6 565,762 - -0.0 565,762 - -0.1 565,762 - -1.4 565,762 - -1.2 565,762 - +1.0 565,911 + ABZR86_RS02800 0.14 -1.4 565,911 + ABZR86_RS02800 0.14 -0.8 565,987 - ABZR86_RS02800 0.18 -0.2 566,016 + ABZR86_RS02800 0.20 +1.5 566,259 + ABZR86_RS02800 0.34 +0.0 566,259 + ABZR86_RS02800 0.34 -1.3 566,259 + ABZR86_RS02800 0.34 -0.1 566,259 + ABZR86_RS02800 0.34 +0.7 566,259 + ABZR86_RS02800 0.34 -0.6 566,260 - ABZR86_RS02800 0.34 -0.0 566,260 - ABZR86_RS02800 0.34 -0.4 566,260 - ABZR86_RS02800 0.34 +0.5 566,260 - ABZR86_RS02800 0.34 -0.5 566,388 + ABZR86_RS02800 0.42 -0.5 566,388 + ABZR86_RS02800 0.42 -1.5 566,388 + ABZR86_RS02800 0.42 -2.1 566,388 + ABZR86_RS02800 0.42 +0.5 566,389 - ABZR86_RS02800 0.42 -0.5 566,389 - ABZR86_RS02800 0.42 -1.0 566,389 - ABZR86_RS02800 0.42 -0.0 566,885 + ABZR86_RS02800 0.71 -0.4 567,063 + ABZR86_RS02800 0.81 -1.8 567,063 + ABZR86_RS02800 0.81 -0.4 567,063 + ABZR86_RS02800 0.81 -0.4 567,063 + ABZR86_RS02800 0.81 -0.8 567,064 - ABZR86_RS02800 0.81 +0.0 567,064 - ABZR86_RS02800 0.81 +0.5 567,066 - ABZR86_RS02800 0.81 +1.1 567,276 + -1.2 567,277 - -0.6 567,277 - -2.1 567,416 + +0.4 567,416 + +0.1 567,416 + -0.7 567,417 - -0.5 567,417 - +4.1 567,417 - -0.2 567,449 - -0.8 567,558 - ABZR86_RS02805 0.21 -0.2 567,797 + ABZR86_RS02805 0.87 +0.0 567,798 - ABZR86_RS02805 0.87 -0.1 567,845 + -2.4 567,845 + -1.4 567,845 + +0.9 567,845 + +0.8 567,845 + -0.2 567,845 + -1.3 567,845 + +0.3 567,845 + +1.2 567,846 - -0.3 567,846 - +0.0 567,846 - -0.9 567,846 - -0.1 567,846 - +1.3 567,846 - +0.0 567,846 - -0.9 567,846 - +0.7 567,846 - -0.2 567,846 - -0.7 567,846 - -0.6 567,846 - -1.1 567,846 - +0.9 567,849 + +1.7 567,849 + -0.0 567,849 + -0.5 567,849 + +0.4 567,850 - -0.1 567,850 - -0.7 567,850 - -0.4 567,850 - -0.6 567,850 - -0.2 567,850 - -0.0 567,850 - +0.6 567,850 - -3.0 567,850 - +0.4 567,935 + +0.3 567,935 + -0.4 567,935 + +0.7 567,935 + +0.0 567,935 + -0.2 567,935 + -0.8 567,935 + -1.1 567,935 + +0.1 567,936 - +0.7 567,936 - -0.9 567,991 - -0.4 568,044 - ABZR86_RS02810 0.33 +0.6 568,081 + ABZR86_RS02810 0.62 -0.8 568,081 + ABZR86_RS02810 0.62 +0.3 568,082 - ABZR86_RS02810 0.63 +0.3 568,094 - ABZR86_RS02810 0.72 +0.0 568,094 - ABZR86_RS02810 0.72 +0.2 568,094 - ABZR86_RS02810 0.72 -1.4 568,127 + -1.1 568,127 + -0.7 568,215 + +0.6 568,215 + +0.3 568,215 + +0.4 568,215 + +0.6 568,215 + +0.3 568,215 + +0.4 568,215 + -0.5 568,215 + -0.4 568,215 + -0.1 568,216 - -0.5 568,216 - +0.2 568,216 - +1.3 568,216 - -0.3 568,216 - +0.1 568,216 - -0.9 568,216 - +0.1 568,216 - -0.4 568,216 - +1.6
Or see this region's nucleotide sequence