Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02680

Experiment: Nalidixic 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02675 and ABZR86_RS02680 are separated by 2 nucleotidesABZR86_RS02680 and ABZR86_RS02685 are separated by 36 nucleotidesABZR86_RS02685 and ABZR86_RS02690 are separated by 1 nucleotides ABZR86_RS02675: ABZR86_RS02675 - hypothetical protein, at 542,068 to 543,192 _RS02675 ABZR86_RS02680: ABZR86_RS02680 - hypothetical protein, at 543,195 to 543,353 _RS02680 ABZR86_RS02685: ABZR86_RS02685 - hypothetical protein, at 543,390 to 543,671 _RS02685 ABZR86_RS02690: ABZR86_RS02690 - hypothetical protein, at 543,673 to 544,320 _RS02690 Position (kb) 543 544Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 542.296 kb on + strand, within ABZR86_RS02675at 542.398 kb on + strand, within ABZR86_RS02675at 542.398 kb on + strand, within ABZR86_RS02675at 542.399 kb on - strand, within ABZR86_RS02675at 542.603 kb on + strand, within ABZR86_RS02675at 542.603 kb on + strand, within ABZR86_RS02675at 542.603 kb on + strand, within ABZR86_RS02675at 542.603 kb on + strand, within ABZR86_RS02675at 542.603 kb on + strand, within ABZR86_RS02675at 542.604 kb on - strand, within ABZR86_RS02675at 542.604 kb on - strand, within ABZR86_RS02675at 542.604 kb on - strand, within ABZR86_RS02675at 542.604 kb on - strand, within ABZR86_RS02675at 542.604 kb on - strand, within ABZR86_RS02675at 542.707 kb on + strand, within ABZR86_RS02675at 542.707 kb on + strand, within ABZR86_RS02675at 542.709 kb on + strand, within ABZR86_RS02675at 542.710 kb on - strand, within ABZR86_RS02675at 542.710 kb on - strand, within ABZR86_RS02675at 542.746 kb on + strand, within ABZR86_RS02675at 542.746 kb on + strand, within ABZR86_RS02675at 542.747 kb on - strand, within ABZR86_RS02675at 542.747 kb on - strand, within ABZR86_RS02675at 542.784 kb on + strand, within ABZR86_RS02675at 542.784 kb on + strand, within ABZR86_RS02675at 542.785 kb on - strand, within ABZR86_RS02675at 542.882 kb on - strand, within ABZR86_RS02675at 542.935 kb on + strand, within ABZR86_RS02675at 542.936 kb on - strand, within ABZR86_RS02675at 542.936 kb on - strand, within ABZR86_RS02675at 542.975 kb on + strand, within ABZR86_RS02675at 542.975 kb on + strand, within ABZR86_RS02675at 542.976 kb on - strand, within ABZR86_RS02675at 542.976 kb on - strand, within ABZR86_RS02675at 542.976 kb on - strand, within ABZR86_RS02675at 542.976 kb on - strand, within ABZR86_RS02675at 543.072 kb on + strand, within ABZR86_RS02675at 543.073 kb on - strand, within ABZR86_RS02675at 543.204 kb on + strandat 543.204 kb on + strandat 543.204 kb on + strandat 543.204 kb on + strandat 543.205 kb on - strandat 543.291 kb on + strand, within ABZR86_RS02680at 543.292 kb on - strand, within ABZR86_RS02680at 543.300 kb on + strand, within ABZR86_RS02680at 543.344 kb on + strandat 543.402 kb on - strandat 543.570 kb on + strand, within ABZR86_RS02685at 543.571 kb on - strand, within ABZR86_RS02685at 543.571 kb on - strand, within ABZR86_RS02685at 543.609 kb on + strand, within ABZR86_RS02685at 543.609 kb on + strand, within ABZR86_RS02685at 543.610 kb on - strand, within ABZR86_RS02685at 543.666 kb on + strandat 543.672 kb on + strandat 543.672 kb on + strandat 543.673 kb on - strandat 543.673 kb on - strandat 543.690 kb on + strandat 543.690 kb on + strandat 543.690 kb on + strandat 543.697 kb on + strandat 543.697 kb on + strandat 543.698 kb on - strandat 543.698 kb on - strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.734 kb on - strandat 543.734 kb on - strandat 543.788 kb on - strand, within ABZR86_RS02690at 543.806 kb on - strand, within ABZR86_RS02690at 543.868 kb on + strand, within ABZR86_RS02690at 543.868 kb on + strand, within ABZR86_RS02690at 543.869 kb on - strand, within ABZR86_RS02690at 543.869 kb on - strand, within ABZR86_RS02690at 543.889 kb on + strand, within ABZR86_RS02690at 543.890 kb on - strand, within ABZR86_RS02690at 543.890 kb on - strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.916 kb on - strand, within ABZR86_RS02690at 543.952 kb on + strand, within ABZR86_RS02690at 543.953 kb on - strand, within ABZR86_RS02690at 543.953 kb on - strand, within ABZR86_RS02690at 543.953 kb on - strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.956 kb on - strand, within ABZR86_RS02690at 543.956 kb on - strand, within ABZR86_RS02690at 544.095 kb on + strand, within ABZR86_RS02690at 544.095 kb on + strand, within ABZR86_RS02690at 544.096 kb on - strand, within ABZR86_RS02690at 544.123 kb on + strand, within ABZR86_RS02690at 544.123 kb on + strand, within ABZR86_RS02690at 544.124 kb on - strand, within ABZR86_RS02690at 544.124 kb on - strand, within ABZR86_RS02690at 544.283 kb on + strandat 544.283 kb on + strandat 544.283 kb on + strandat 544.283 kb on + strandat 544.284 kb on - strandat 544.284 kb on - strandat 544.318 kb on + strandat 544.319 kb on - strandat 544.319 kb on - strandat 544.352 kb on - strandat 544.352 kb on - strandat 544.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml
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542,296 + ABZR86_RS02675 0.20 -2.3
542,398 + ABZR86_RS02675 0.29 -2.4
542,398 + ABZR86_RS02675 0.29 -0.1
542,399 - ABZR86_RS02675 0.29 -0.6
542,603 + ABZR86_RS02675 0.48 -0.6
542,603 + ABZR86_RS02675 0.48 +0.2
542,603 + ABZR86_RS02675 0.48 +0.3
542,603 + ABZR86_RS02675 0.48 +0.9
542,603 + ABZR86_RS02675 0.48 -0.9
542,604 - ABZR86_RS02675 0.48 +0.7
542,604 - ABZR86_RS02675 0.48 +0.0
542,604 - ABZR86_RS02675 0.48 -1.0
542,604 - ABZR86_RS02675 0.48 -0.5
542,604 - ABZR86_RS02675 0.48 -0.8
542,707 + ABZR86_RS02675 0.57 -0.2
542,707 + ABZR86_RS02675 0.57 +1.2
542,709 + ABZR86_RS02675 0.57 -0.5
542,710 - ABZR86_RS02675 0.57 +0.6
542,710 - ABZR86_RS02675 0.57 -0.5
542,746 + ABZR86_RS02675 0.60 +0.2
542,746 + ABZR86_RS02675 0.60 +0.3
542,747 - ABZR86_RS02675 0.60 +0.3
542,747 - ABZR86_RS02675 0.60 +0.7
542,784 + ABZR86_RS02675 0.64 +0.2
542,784 + ABZR86_RS02675 0.64 -0.2
542,785 - ABZR86_RS02675 0.64 -0.1
542,882 - ABZR86_RS02675 0.72 -0.5
542,935 + ABZR86_RS02675 0.77 -0.7
542,936 - ABZR86_RS02675 0.77 +0.8
542,936 - ABZR86_RS02675 0.77 -0.1
542,975 + ABZR86_RS02675 0.81 +0.5
542,975 + ABZR86_RS02675 0.81 +0.2
542,976 - ABZR86_RS02675 0.81 -1.5
542,976 - ABZR86_RS02675 0.81 +0.8
542,976 - ABZR86_RS02675 0.81 +0.6
542,976 - ABZR86_RS02675 0.81 +0.7
543,072 + ABZR86_RS02675 0.89 +1.0
543,073 - ABZR86_RS02675 0.89 -0.1
543,204 + +0.1
543,204 + +0.0
543,204 + +0.1
543,204 + -0.5
543,205 - +0.2
543,291 + ABZR86_RS02680 0.60 -0.6
543,292 - ABZR86_RS02680 0.61 -0.2
543,300 + ABZR86_RS02680 0.66 -0.8
543,344 + -0.2
543,402 - +0.5
543,570 + ABZR86_RS02685 0.64 -2.0
543,571 - ABZR86_RS02685 0.64 +0.1
543,571 - ABZR86_RS02685 0.64 -0.6
543,609 + ABZR86_RS02685 0.78 -0.1
543,609 + ABZR86_RS02685 0.78 -0.9
543,610 - ABZR86_RS02685 0.78 +0.7
543,666 + -0.0
543,672 + +1.4
543,672 + -0.2
543,673 - -0.0
543,673 - -1.1
543,690 + -0.3
543,690 + -0.3
543,690 + -0.4
543,697 + +0.1
543,697 + -0.9
543,698 - +0.2
543,698 - +0.0
543,733 + -0.3
543,733 + +0.6
543,733 + -0.1
543,733 + +0.4
543,734 - +0.2
543,734 - -0.3
543,788 - ABZR86_RS02690 0.18 +0.1
543,806 - ABZR86_RS02690 0.21 +0.5
543,868 + ABZR86_RS02690 0.30 +1.5
543,868 + ABZR86_RS02690 0.30 +0.4
543,869 - ABZR86_RS02690 0.30 -0.6
543,869 - ABZR86_RS02690 0.30 +0.0
543,889 + ABZR86_RS02690 0.33 +1.9
543,890 - ABZR86_RS02690 0.33 +0.4
543,890 - ABZR86_RS02690 0.33 -0.5
543,915 + ABZR86_RS02690 0.37 -0.3
543,915 + ABZR86_RS02690 0.37 +0.2
543,915 + ABZR86_RS02690 0.37 +0.4
543,915 + ABZR86_RS02690 0.37 +0.0
543,916 - ABZR86_RS02690 0.38 -0.2
543,952 + ABZR86_RS02690 0.43 -0.0
543,953 - ABZR86_RS02690 0.43 +1.6
543,953 - ABZR86_RS02690 0.43 -0.1
543,953 - ABZR86_RS02690 0.43 -0.4
543,955 + ABZR86_RS02690 0.44 +1.0
543,955 + ABZR86_RS02690 0.44 -0.2
543,955 + ABZR86_RS02690 0.44 -2.4
543,955 + ABZR86_RS02690 0.44 +0.2
543,955 + ABZR86_RS02690 0.44 +0.6
543,955 + ABZR86_RS02690 0.44 +0.7
543,955 + ABZR86_RS02690 0.44 +7.6
543,956 - ABZR86_RS02690 0.44 +0.6
543,956 - ABZR86_RS02690 0.44 +0.0
544,095 + ABZR86_RS02690 0.65 -0.6
544,095 + ABZR86_RS02690 0.65 -0.1
544,096 - ABZR86_RS02690 0.65 -0.0
544,123 + ABZR86_RS02690 0.69 -0.6
544,123 + ABZR86_RS02690 0.69 -0.5
544,124 - ABZR86_RS02690 0.70 -2.3
544,124 - ABZR86_RS02690 0.70 +0.1
544,283 + +0.9
544,283 + +1.2
544,283 + +0.1
544,283 + -0.1
544,284 - +0.4
544,284 - -0.6
544,318 + +0.3
544,319 - +0.2
544,319 - +0.0
544,352 - +0.6
544,352 - -0.2
544,352 - -0.5

Or see this region's nucleotide sequence