Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02200 and ABZR86_RS02205 are separated by 118 nucleotides ABZR86_RS02205 and ABZR86_RS02210 are separated by 83 nucleotides ABZR86_RS02210 and ABZR86_RS02215 are separated by 141 nucleotides ABZR86_RS02215 and ABZR86_RS02220 are separated by 81 nucleotides
ABZR86_RS02200: ABZR86_RS02200 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 473,171 to 475,441
_RS02200
ABZR86_RS02205: ABZR86_RS02205 - translation initiation factor IF-1, at 475,560 to 475,778
_RS02205
ABZR86_RS02210: ABZR86_RS02210 - polyhydroxyalkanoic acid system family protein, at 475,862 to 476,137
_RS02210
ABZR86_RS02215: ABZR86_RS02215 - FHA domain-containing protein, at 476,279 to 477,049
_RS02215
ABZR86_RS02220: ABZR86_RS02220 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 477,131 to 478,216
_RS02220
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 475.439 kb on + strand at 475.440 kb on - strand at 475.440 kb on - strand at 475.440 kb on - strand at 475.440 kb on - strand at 475.852 kb on + strand at 475.853 kb on - strand at 475.915 kb on + strand, within ABZR86_RS02210 at 475.915 kb on + strand, within ABZR86_RS02210 at 475.916 kb on - strand, within ABZR86_RS02210 at 475.916 kb on - strand, within ABZR86_RS02210 at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.165 kb on + strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.166 kb on - strand at 476.168 kb on + strand at 476.169 kb on - strand at 476.169 kb on - strand at 476.240 kb on - strand at 476.246 kb on + strand at 476.247 kb on - strand at 476.247 kb on - strand at 476.247 kb on - strand at 476.247 kb on - strand at 476.247 kb on - strand at 476.264 kb on + strand at 476.265 kb on - strand at 476.265 kb on - strand at 476.465 kb on + strand, within ABZR86_RS02215 at 476.465 kb on + strand, within ABZR86_RS02215 at 476.465 kb on + strand, within ABZR86_RS02215 at 476.465 kb on + strand, within ABZR86_RS02215 at 476.466 kb on - strand, within ABZR86_RS02215 at 476.466 kb on - strand, within ABZR86_RS02215 at 476.466 kb on - strand, within ABZR86_RS02215 at 477.047 kb on + strand at 477.047 kb on + strand at 477.047 kb on + strand at 477.063 kb on + strand at 477.064 kb on - strand at 477.064 kb on - strand at 477.096 kb on - strand at 477.107 kb on + strand at 477.107 kb on + strand at 477.107 kb on + strand at 477.107 kb on + strand at 477.107 kb on + strand at 477.107 kb on + strand at 477.108 kb on - strand at 477.108 kb on - strand at 477.108 kb on - strand at 477.108 kb on - strand at 477.108 kb on - strand at 477.118 kb on + strand at 477.119 kb on - strand at 477.119 kb on - strand at 477.119 kb on - strand at 477.329 kb on + strand, within ABZR86_RS02220 at 477.330 kb on - strand, within ABZR86_RS02220 at 477.416 kb on + strand, within ABZR86_RS02220 at 477.416 kb on + strand, within ABZR86_RS02220 at 477.416 kb on + strand, within ABZR86_RS02220 at 477.416 kb on + strand, within ABZR86_RS02220 at 477.417 kb on - strand, within ABZR86_RS02220 at 477.417 kb on - strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.467 kb on + strand, within ABZR86_RS02220 at 477.509 kb on + strand, within ABZR86_RS02220 at 477.510 kb on - strand, within ABZR86_RS02220 at 477.510 kb on - strand, within ABZR86_RS02220 at 477.510 kb on - strand, within ABZR86_RS02220 at 477.560 kb on + strand, within ABZR86_RS02220 at 477.560 kb on + strand, within ABZR86_RS02220 at 477.560 kb on + strand, within ABZR86_RS02220 at 477.561 kb on - strand, within ABZR86_RS02220 at 477.561 kb on - strand, within ABZR86_RS02220 at 477.569 kb on + strand, within ABZR86_RS02220 at 477.570 kb on - strand, within ABZR86_RS02220 at 477.570 kb on - strand, within ABZR86_RS02220 at 477.570 kb on - strand, within ABZR86_RS02220 at 477.570 kb on - strand, within ABZR86_RS02220 at 477.570 kb on - strand, within ABZR86_RS02220 at 477.603 kb on - strand, within ABZR86_RS02220 at 477.701 kb on + strand, within ABZR86_RS02220 at 477.701 kb on + strand, within ABZR86_RS02220 at 477.701 kb on + strand, within ABZR86_RS02220 at 477.701 kb on + strand, within ABZR86_RS02220 at 477.701 kb on + strand, within ABZR86_RS02220 at 477.702 kb on - strand, within ABZR86_RS02220 at 477.850 kb on + strand, within ABZR86_RS02220 at 477.850 kb on + strand, within ABZR86_RS02220 at 477.850 kb on + strand, within ABZR86_RS02220 at 477.850 kb on + strand, within ABZR86_RS02220 at 477.850 kb on + strand, within ABZR86_RS02220 at 477.851 kb on - strand, within ABZR86_RS02220 at 477.851 kb on - strand, within ABZR86_RS02220 at 477.851 kb on - strand, within ABZR86_RS02220 at 477.851 kb on - strand, within ABZR86_RS02220 at 477.863 kb on + strand, within ABZR86_RS02220 at 477.863 kb on + strand, within ABZR86_RS02220 at 477.864 kb on - strand, within ABZR86_RS02220 at 477.864 kb on - strand, within ABZR86_RS02220 at 477.953 kb on + strand, within ABZR86_RS02220 at 477.954 kb on - strand, within ABZR86_RS02220 at 477.980 kb on + strand, within ABZR86_RS02220 at 477.981 kb on - strand, within ABZR86_RS02220 at 477.983 kb on + strand, within ABZR86_RS02220 at 477.983 kb on + strand, within ABZR86_RS02220 at 477.983 kb on + strand, within ABZR86_RS02220 at 477.983 kb on + strand, within ABZR86_RS02220 at 477.984 kb on - strand, within ABZR86_RS02220 at 477.984 kb on - strand, within ABZR86_RS02220 at 477.984 kb on - strand, within ABZR86_RS02220 at 477.984 kb on - strand, within ABZR86_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 475,439 + -0.2 475,440 - -0.2 475,440 - +0.1 475,440 - +1.2 475,440 - +0.7 475,852 + -0.1 475,853 - -0.4 475,915 + ABZR86_RS02210 0.19 +4.1 475,915 + ABZR86_RS02210 0.19 -0.4 475,916 - ABZR86_RS02210 0.20 +0.0 475,916 - ABZR86_RS02210 0.20 +1.1 476,165 + -0.3 476,165 + -0.2 476,165 + +1.1 476,165 + -0.2 476,165 + -0.3 476,165 + +0.2 476,165 + -0.6 476,165 + -1.0 476,165 + -0.7 476,165 + -0.5 476,165 + +0.1 476,165 + -1.5 476,165 + +0.7 476,165 + -0.6 476,165 + +0.5 476,165 + +0.4 476,165 + -0.3 476,165 + +0.8 476,165 + +1.4 476,166 - -0.4 476,166 - -0.8 476,166 - -0.7 476,166 - -0.0 476,166 - -0.1 476,166 - -0.8 476,166 - -0.4 476,166 - +1.9 476,166 - -0.3 476,168 + +0.3 476,169 - -0.3 476,169 - +0.3 476,240 - +0.7 476,246 + -1.7 476,247 - -0.1 476,247 - +0.1 476,247 - -1.8 476,247 - +0.2 476,247 - -0.8 476,264 + -0.8 476,265 - +0.1 476,265 - +1.0 476,465 + ABZR86_RS02215 0.24 -0.5 476,465 + ABZR86_RS02215 0.24 -1.2 476,465 + ABZR86_RS02215 0.24 +1.3 476,465 + ABZR86_RS02215 0.24 -0.8 476,466 - ABZR86_RS02215 0.24 -1.0 476,466 - ABZR86_RS02215 0.24 -0.5 476,466 - ABZR86_RS02215 0.24 -0.5 477,047 + -0.0 477,047 + +0.5 477,047 + +0.2 477,063 + -0.4 477,064 - +0.1 477,064 - -1.3 477,096 - -0.2 477,107 + -0.9 477,107 + -2.4 477,107 + -0.4 477,107 + -1.2 477,107 + +0.7 477,107 + -1.0 477,108 - -0.2 477,108 - -0.1 477,108 - +0.7 477,108 - +0.3 477,108 - -2.7 477,118 + +0.8 477,119 - +0.7 477,119 - -0.2 477,119 - +0.2 477,329 + ABZR86_RS02220 0.18 -0.3 477,330 - ABZR86_RS02220 0.18 +0.0 477,416 + ABZR86_RS02220 0.26 +0.0 477,416 + ABZR86_RS02220 0.26 +0.0 477,416 + ABZR86_RS02220 0.26 +0.4 477,416 + ABZR86_RS02220 0.26 +0.4 477,417 - ABZR86_RS02220 0.26 -0.6 477,417 - ABZR86_RS02220 0.26 +0.3 477,467 + ABZR86_RS02220 0.31 -0.2 477,467 + ABZR86_RS02220 0.31 +0.3 477,467 + ABZR86_RS02220 0.31 -0.4 477,467 + ABZR86_RS02220 0.31 -0.6 477,467 + ABZR86_RS02220 0.31 +0.2 477,467 + ABZR86_RS02220 0.31 +0.6 477,467 + ABZR86_RS02220 0.31 +0.6 477,509 + ABZR86_RS02220 0.35 -0.2 477,510 - ABZR86_RS02220 0.35 +0.7 477,510 - ABZR86_RS02220 0.35 -0.0 477,510 - ABZR86_RS02220 0.35 +0.3 477,560 + ABZR86_RS02220 0.40 +0.9 477,560 + ABZR86_RS02220 0.40 +1.0 477,560 + ABZR86_RS02220 0.40 -0.3 477,561 - ABZR86_RS02220 0.40 +0.2 477,561 - ABZR86_RS02220 0.40 +0.2 477,569 + ABZR86_RS02220 0.40 +1.7 477,570 - ABZR86_RS02220 0.40 +0.6 477,570 - ABZR86_RS02220 0.40 -0.1 477,570 - ABZR86_RS02220 0.40 -1.0 477,570 - ABZR86_RS02220 0.40 -0.3 477,570 - ABZR86_RS02220 0.40 -0.1 477,603 - ABZR86_RS02220 0.43 -0.2 477,701 + ABZR86_RS02220 0.52 -1.5 477,701 + ABZR86_RS02220 0.52 +1.4 477,701 + ABZR86_RS02220 0.52 +0.5 477,701 + ABZR86_RS02220 0.52 -0.7 477,701 + ABZR86_RS02220 0.52 +0.4 477,702 - ABZR86_RS02220 0.53 -0.2 477,850 + ABZR86_RS02220 0.66 +1.2 477,850 + ABZR86_RS02220 0.66 +0.2 477,850 + ABZR86_RS02220 0.66 +0.1 477,850 + ABZR86_RS02220 0.66 +0.9 477,850 + ABZR86_RS02220 0.66 -0.8 477,851 - ABZR86_RS02220 0.66 +0.8 477,851 - ABZR86_RS02220 0.66 -1.5 477,851 - ABZR86_RS02220 0.66 +0.3 477,851 - ABZR86_RS02220 0.66 -0.2 477,863 + ABZR86_RS02220 0.67 -0.4 477,863 + ABZR86_RS02220 0.67 -0.1 477,864 - ABZR86_RS02220 0.67 -0.4 477,864 - ABZR86_RS02220 0.67 -2.3 477,953 + ABZR86_RS02220 0.76 +0.9 477,954 - ABZR86_RS02220 0.76 +0.2 477,980 + ABZR86_RS02220 0.78 +0.2 477,981 - ABZR86_RS02220 0.78 +0.1 477,983 + ABZR86_RS02220 0.78 -0.1 477,983 + ABZR86_RS02220 0.78 -0.3 477,983 + ABZR86_RS02220 0.78 +1.2 477,983 + ABZR86_RS02220 0.78 -0.5 477,984 - ABZR86_RS02220 0.79 +0.4 477,984 - ABZR86_RS02220 0.79 +0.6 477,984 - ABZR86_RS02220 0.79 -1.0 477,984 - ABZR86_RS02220 0.79 -0.7
Or see this region's nucleotide sequence