Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01810 and ABZR86_RS01815 are separated by 61 nucleotides ABZR86_RS01815 and ABZR86_RS01820 are separated by 9 nucleotides ABZR86_RS01820 and ABZR86_RS01825 are separated by 222 nucleotides
ABZR86_RS01810: ABZR86_RS01810 - DNA translocase FtsK, at 391,362 to 393,692
_RS01810
ABZR86_RS01815: ABZR86_RS01815 - outer membrane lipoprotein chaperone LolA, at 393,754 to 394,413
_RS01815
ABZR86_RS01820: ABZR86_RS01820 - YoaK family protein, at 394,423 to 395,088
_RS01820
ABZR86_RS01825: ABZR86_RS01825 - replication-associated recombination protein A, at 395,311 to 396,642
_RS01825
Position (kb) 394
395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 393.690 kb on + strand at 393.690 kb on + strand at 393.690 kb on + strand at 393.690 kb on + strand at 393.691 kb on - strand at 394.819 kb on + strand, within ABZR86_RS01820 at 394.819 kb on + strand, within ABZR86_RS01820 at 394.820 kb on - strand, within ABZR86_RS01820 at 394.820 kb on - strand, within ABZR86_RS01820 at 394.879 kb on + strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 395.053 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.063 kb on - strand at 395.063 kb on - strand at 395.063 kb on - strand at 395.063 kb on - strand at 395.087 kb on - strand at 395.138 kb on + strand at 395.205 kb on - strand at 395.299 kb on - strand at 395.745 kb on + strand, within ABZR86_RS01825 at 396.039 kb on + strand, within ABZR86_RS01825 at 396.073 kb on + strand, within ABZR86_RS01825 at 396.073 kb on + strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 393,690 + +0.8 393,690 + -0.5 393,690 + +0.3 393,690 + -0.4 393,691 - -0.8 394,819 + ABZR86_RS01820 0.59 +0.1 394,819 + ABZR86_RS01820 0.59 +1.3 394,820 - ABZR86_RS01820 0.60 -0.4 394,820 - ABZR86_RS01820 0.60 -0.1 394,879 + ABZR86_RS01820 0.68 +0.7 394,880 - ABZR86_RS01820 0.69 -1.1 394,880 - ABZR86_RS01820 0.69 +0.6 394,880 - ABZR86_RS01820 0.69 +0.3 394,880 - ABZR86_RS01820 0.69 -0.4 395,053 + +0.3 395,062 + +0.8 395,062 + -2.9 395,063 - -0.0 395,063 - -2.2 395,063 - +0.7 395,063 - +1.4 395,087 - +0.4 395,138 + -0.8 395,205 - -0.3 395,299 - +0.4 395,745 + ABZR86_RS01825 0.33 -1.4 396,039 + ABZR86_RS01825 0.55 +0.8 396,073 + ABZR86_RS01825 0.57 +0.5 396,073 + ABZR86_RS01825 0.57 +0.9 396,074 - ABZR86_RS01825 0.57 +0.9 396,074 - ABZR86_RS01825 0.57 +2.3 396,074 - ABZR86_RS01825 0.57 -1.9 396,074 - ABZR86_RS01825 0.57 -0.2
Or see this region's nucleotide sequence