Experiment: Nalidixic 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00785 and ABZR86_RS00790 are separated by 34 nucleotides ABZR86_RS00790 and ABZR86_RS00795 are separated by 85 nucleotides ABZR86_RS00795 and ABZR86_RS00800 are separated by 47 nucleotides ABZR86_RS00800 and ABZR86_RS00805 are separated by 166 nucleotides
ABZR86_RS00785: ABZR86_RS00785 - 4-hydroxy-tetrahydrodipicolinate synthase, at 153,963 to 154,856
_RS00785
ABZR86_RS00790: ABZR86_RS00790 - hypothetical protein, at 154,891 to 155,487
_RS00790
ABZR86_RS00795: ABZR86_RS00795 - ferredoxin FdxA, at 155,573 to 155,896
_RS00795
ABZR86_RS00800: ABZR86_RS00800 - tRNA-Glu, at 155,944 to 156,019
_RS00800
ABZR86_RS00805: ABZR86_RS00805 - polynucleotide adenylyltransferase PcnB, at 156,186 to 157,562
_RS00805
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1 at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.901 kb on - strand at 153.927 kb on + strand at 153.928 kb on - strand at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.252 kb on - strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.254 kb on - strand, within ABZR86_RS00790 at 155.254 kb on - strand, within ABZR86_RS00790 at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.913 kb on - strand at 155.915 kb on - strand at 155.915 kb on - strand at 155.915 kb on - strand at 156.007 kb on - strand, within ABZR86_RS00800 at 156.043 kb on - strand at 156.044 kb on + strand at 156.294 kb on + strand at 156.474 kb on + strand, within ABZR86_RS00805 at 156.474 kb on + strand, within ABZR86_RS00805
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.08 mg/ml remove 153,900 + -0.4 153,900 + +0.6 153,900 + -0.1 153,900 + -1.1 153,900 + +0.1 153,900 + -1.8 153,900 + -0.0 153,901 - +0.0 153,927 + -0.0 153,928 - +0.5 155,251 + ABZR86_RS00790 0.60 -1.2 155,251 + ABZR86_RS00790 0.60 -2.1 155,251 + ABZR86_RS00790 0.60 -1.3 155,251 + ABZR86_RS00790 0.60 -0.4 155,252 - ABZR86_RS00790 0.60 +0.1 155,253 + ABZR86_RS00790 0.61 -1.3 155,253 + ABZR86_RS00790 0.61 -1.1 155,253 + ABZR86_RS00790 0.61 -0.5 155,253 + ABZR86_RS00790 0.61 -1.5 155,254 - ABZR86_RS00790 0.61 -1.8 155,254 - ABZR86_RS00790 0.61 +0.8 155,913 - -1.7 155,913 - -0.9 155,913 - -0.9 155,913 - -0.5 155,913 - +0.1 155,913 - -0.7 155,913 - -0.0 155,913 - -0.2 155,913 - -0.5 155,913 - +0.7 155,913 - -0.8 155,913 - -1.0 155,913 - +1.5 155,915 - +0.4 155,915 - -1.4 155,915 - +0.0 156,007 - ABZR86_RS00800 0.83 +0.4 156,043 - +0.4 156,044 + +0.8 156,294 + -1.2 156,474 + ABZR86_RS00805 0.21 +0.5 156,474 + ABZR86_RS00805 0.21 -0.1
Or see this region's nucleotide sequence