Strain Fitness in Sinorhizobium meliloti 1021 around SMc03054

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03051 and SMc03052 overlap by 10 nucleotidesSMc03052 and SMc03053 are separated by 6 nucleotidesSMc03053 and SMc03054 are separated by 124 nucleotidesSMc03054 and SMc03055 overlap by 4 nucleotidesSMc03055 and SMc03056 are separated by 4 nucleotides SMc03051: SMc03051 - flagellar biosynthesis repressor FlbT, at 747,346 to 747,795 SMc03051 SMc03052: SMc03052 - flagellar basal body rod modification protein, at 747,786 to 748,202 SMc03052 SMc03053: SMc03053 - flagellar biosynthesis protein FliQ, at 748,209 to 748,475 SMc03053 SMc03054: SMc03054 - flagellar biosynthesis protein FlhA, at 748,600 to 750,687 SMc03054 SMc03055: SMc03055 - flagellar biosynthesis protein FliR, at 750,684 to 751,436 SMc03055 SMc03056: SMc03056 - hypothetical protein, at 751,441 to 751,854 SMc03056 Position (kb) 748 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 747.726 kb on - strand, within SMc03051at 747.767 kb on + strandat 747.822 kb on + strandat 747.823 kb on - strandat 747.823 kb on - strandat 747.882 kb on + strand, within SMc03052at 747.883 kb on - strand, within SMc03052at 748.126 kb on + strand, within SMc03052at 748.127 kb on - strand, within SMc03052at 748.129 kb on - strand, within SMc03052at 748.192 kb on + strandat 748.237 kb on + strand, within SMc03053at 748.238 kb on - strand, within SMc03053at 748.460 kb on - strandat 748.474 kb on - strandat 748.502 kb on + strandat 748.503 kb on - strandat 748.503 kb on - strandat 748.529 kb on + strandat 748.530 kb on - strandat 748.530 kb on - strandat 748.530 kb on - strandat 748.530 kb on - strandat 748.560 kb on + strandat 748.561 kb on - strandat 749.032 kb on - strand, within SMc03054at 749.273 kb on - strand, within SMc03054at 749.788 kb on + strand, within SMc03054at 749.848 kb on + strand, within SMc03054at 749.848 kb on + strand, within SMc03054at 749.848 kb on + strand, within SMc03054at 749.848 kb on + strand, within SMc03054at 749.848 kb on + strand, within SMc03054at 749.849 kb on - strand, within SMc03054at 749.849 kb on - strand, within SMc03054at 749.849 kb on - strand, within SMc03054at 750.050 kb on + strand, within SMc03054at 750.051 kb on - strand, within SMc03054at 750.112 kb on + strand, within SMc03054at 750.113 kb on - strand, within SMc03054at 750.113 kb on - strand, within SMc03054at 750.154 kb on + strand, within SMc03054at 750.180 kb on + strand, within SMc03054at 750.197 kb on - strand, within SMc03054at 750.519 kb on - strandat 750.560 kb on + strandat 750.560 kb on + strandat 750.561 kb on - strandat 750.583 kb on + strandat 750.583 kb on + strandat 750.583 kb on + strandat 750.584 kb on - strandat 750.584 kb on - strandat 750.858 kb on + strand, within SMc03055at 750.859 kb on - strand, within SMc03055at 750.859 kb on - strand, within SMc03055at 750.888 kb on + strand, within SMc03055at 750.894 kb on + strand, within SMc03055at 750.894 kb on + strand, within SMc03055at 750.895 kb on - strand, within SMc03055at 750.895 kb on - strand, within SMc03055at 750.895 kb on - strand, within SMc03055at 750.949 kb on - strand, within SMc03055at 750.949 kb on - strand, within SMc03055at 750.951 kb on + strand, within SMc03055at 750.951 kb on + strand, within SMc03055at 750.952 kb on - strand, within SMc03055at 750.952 kb on - strand, within SMc03055at 751.037 kb on + strand, within SMc03055at 751.257 kb on + strand, within SMc03055at 751.312 kb on + strand, within SMc03055at 751.312 kb on + strand, within SMc03055at 751.313 kb on - strand, within SMc03055at 751.313 kb on - strand, within SMc03055at 751.320 kb on + strand, within SMc03055at 751.321 kb on - strand, within SMc03055at 751.321 kb on - strand, within SMc03055at 751.338 kb on + strand, within SMc03055at 751.339 kb on - strand, within SMc03055at 751.621 kb on + strand, within SMc03056at 751.621 kb on + strand, within SMc03056at 751.622 kb on - strand, within SMc03056at 751.622 kb on - strand, within SMc03056at 751.622 kb on - strand, within SMc03056

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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747,726 - SMc03051 0.84 -1.8
747,767 + -0.2
747,822 + +0.6
747,823 - +1.0
747,823 - -0.2
747,882 + SMc03052 0.23 +0.8
747,883 - SMc03052 0.23 +1.6
748,126 + SMc03052 0.82 -2.7
748,127 - SMc03052 0.82 +0.3
748,129 - SMc03052 0.82 -0.1
748,192 + -0.7
748,237 + SMc03053 0.10 +2.4
748,238 - SMc03053 0.11 +0.9
748,460 - +0.2
748,474 - -0.3
748,502 + -2.7
748,503 - -1.7
748,503 - +1.6
748,529 + +0.2
748,530 - +0.9
748,530 - -0.2
748,530 - -0.3
748,530 - +0.0
748,560 + -0.7
748,561 - -0.2
749,032 - SMc03054 0.21 -0.6
749,273 - SMc03054 0.32 +0.1
749,788 + SMc03054 0.57 +2.6
749,848 + SMc03054 0.60 -2.0
749,848 + SMc03054 0.60 -0.7
749,848 + SMc03054 0.60 +0.8
749,848 + SMc03054 0.60 +0.6
749,848 + SMc03054 0.60 -0.0
749,849 - SMc03054 0.60 -1.3
749,849 - SMc03054 0.60 -0.1
749,849 - SMc03054 0.60 -1.1
750,050 + SMc03054 0.69 -0.3
750,051 - SMc03054 0.69 +0.3
750,112 + SMc03054 0.72 +0.9
750,113 - SMc03054 0.72 -1.8
750,113 - SMc03054 0.72 +1.2
750,154 + SMc03054 0.74 -0.2
750,180 + SMc03054 0.76 -0.2
750,197 - SMc03054 0.76 +0.3
750,519 - -0.9
750,560 + -2.0
750,560 + -0.0
750,561 - +2.6
750,583 + +0.7
750,583 + -0.3
750,583 + +0.1
750,584 - -2.6
750,584 - -0.6
750,858 + SMc03055 0.23 -0.2
750,859 - SMc03055 0.23 +0.1
750,859 - SMc03055 0.23 +0.2
750,888 + SMc03055 0.27 +0.4
750,894 + SMc03055 0.28 -0.4
750,894 + SMc03055 0.28 -1.1
750,895 - SMc03055 0.28 -1.4
750,895 - SMc03055 0.28 -0.5
750,895 - SMc03055 0.28 -3.1
750,949 - SMc03055 0.35 -0.3
750,949 - SMc03055 0.35 -0.0
750,951 + SMc03055 0.35 +0.5
750,951 + SMc03055 0.35 +0.8
750,952 - SMc03055 0.36 +0.2
750,952 - SMc03055 0.36 -0.3
751,037 + SMc03055 0.47 -0.3
751,257 + SMc03055 0.76 -0.5
751,312 + SMc03055 0.83 +0.7
751,312 + SMc03055 0.83 +0.1
751,313 - SMc03055 0.84 -0.4
751,313 - SMc03055 0.84 -0.2
751,320 + SMc03055 0.84 +0.3
751,321 - SMc03055 0.85 +1.1
751,321 - SMc03055 0.85 -2.9
751,338 + SMc03055 0.87 +1.0
751,339 - SMc03055 0.87 -1.6
751,621 + SMc03056 0.43 -1.1
751,621 + SMc03056 0.43 +1.0
751,622 - SMc03056 0.44 +0.7
751,622 - SMc03056 0.44 -0.2
751,622 - SMc03056 0.44 +1.8

Or see this region's nucleotide sequence