Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03014 and SMc03015 are separated by 826 nucleotides
SMc03014: SMc03014 - flagellar MS-ring protein, at 711,589 to 713,262
SMc03014
SMc03015: SMc03015 - transcriptional regulator, at 714,089 to 714,826
SMc03015
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 710.702 kb on + strand at 710.702 kb on + strand at 710.746 kb on + strand at 710.747 kb on - strand at 710.831 kb on + strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.837 kb on + strand at 710.838 kb on - strand at 710.839 kb on + strand at 710.839 kb on + strand at 710.840 kb on - strand at 710.841 kb on - strand at 710.845 kb on - strand at 710.922 kb on - strand at 710.948 kb on - strand at 710.948 kb on - strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.400 kb on - strand at 711.400 kb on - strand at 711.400 kb on - strand at 711.439 kb on + strand at 711.571 kb on - strand at 711.708 kb on + strand at 711.712 kb on + strand at 711.712 kb on + strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.713 kb on - strand at 711.742 kb on + strand at 711.742 kb on + strand at 711.742 kb on + strand at 711.742 kb on + strand at 711.742 kb on + strand at 712.511 kb on + strand, within SMc03014 at 712.511 kb on + strand, within SMc03014 at 712.512 kb on - strand, within SMc03014 at 712.600 kb on + strand, within SMc03014 at 712.600 kb on + strand, within SMc03014 at 712.642 kb on + strand, within SMc03014 at 712.739 kb on - strand, within SMc03014 at 712.782 kb on - strand, within SMc03014 at 712.946 kb on + strand, within SMc03014 at 712.947 kb on - strand, within SMc03014 at 713.228 kb on + strand at 713.375 kb on + strand at 713.376 kb on - strand at 713.387 kb on + strand at 713.422 kb on + strand at 713.539 kb on - strand at 713.967 kb on - strand at 714.159 kb on + strand at 714.160 kb on - strand at 714.242 kb on + strand, within SMc03015 at 714.242 kb on + strand, within SMc03015 at 714.243 kb on - strand, within SMc03015 at 714.260 kb on + strand, within SMc03015
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 710,702 + +0.8 710,702 + +1.6 710,746 + -0.3 710,747 - +0.5 710,831 + -0.6 710,832 - +0.1 710,832 - -0.2 710,832 - -0.5 710,832 - -1.3 710,832 - +0.2 710,832 - -0.5 710,832 - -0.6 710,835 + -0.7 710,835 + +1.6 710,835 + -0.4 710,835 + -1.0 710,835 + +0.4 710,835 + +0.8 710,835 + +0.3 710,835 + +0.7 710,835 + +1.9 710,835 + +0.3 710,835 + -0.8 710,836 - +0.0 710,836 - +0.0 710,836 - +0.2 710,836 - +1.1 710,836 - -0.3 710,836 - -0.1 710,836 - -0.1 710,836 - -4.0 710,836 - +0.3 710,836 - -0.1 710,836 - +0.7 710,836 - +0.0 710,837 + +1.0 710,838 - +0.4 710,839 + -2.6 710,839 + +1.0 710,840 - -1.6 710,841 - +0.2 710,845 - -0.3 710,922 - -2.4 710,948 - -0.8 710,948 - -0.3 711,303 + +0.3 711,303 + +0.0 711,303 + +0.4 711,303 + -0.7 711,303 + -0.3 711,303 + +0.5 711,303 + -0.6 711,400 - +1.0 711,400 - -0.4 711,400 - +1.0 711,439 + -2.9 711,571 - +0.7 711,708 + +1.5 711,712 + +0.5 711,712 + -2.0 711,713 - +1.4 711,713 - -1.0 711,713 - +1.4 711,713 - -0.3 711,713 - -0.2 711,713 - +0.9 711,713 - +0.3 711,713 - -0.3 711,713 - -0.5 711,713 - -0.4 711,742 + +0.2 711,742 + +0.9 711,742 + -1.3 711,742 + -0.3 711,742 + -0.7 712,511 + SMc03014 0.55 -1.6 712,511 + SMc03014 0.55 -0.2 712,512 - SMc03014 0.55 +0.3 712,600 + SMc03014 0.60 -0.0 712,600 + SMc03014 0.60 -0.8 712,642 + SMc03014 0.63 -2.4 712,739 - SMc03014 0.69 -0.7 712,782 - SMc03014 0.71 -2.4 712,946 + SMc03014 0.81 +1.0 712,947 - SMc03014 0.81 -0.8 713,228 + +0.8 713,375 + +0.9 713,376 - +0.1 713,387 + +1.2 713,422 + +2.9 713,539 - +0.6 713,967 - +2.0 714,159 + -1.6 714,160 - +0.3 714,242 + SMc03015 0.21 +0.5 714,242 + SMc03015 0.21 +0.2 714,243 - SMc03015 0.21 -2.6 714,260 + SMc03015 0.23 +0.5
Or see this region's nucleotide sequence