Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03007 and SMc03008 are separated by 5 nucleotides SMc03008 and SMc03009 overlap by 4 nucleotides SMc03009 and SMc03010 overlap by 4 nucleotides
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1 at 706.596 kb on - strand at 706.596 kb on - strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.619 kb on - strand at 706.619 kb on - strand at 706.689 kb on - strand at 707.161 kb on + strand, within SMc03008 at 707.185 kb on + strand at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.385 kb on - strand, within SMc03009 at 707.575 kb on + strand, within SMc03009 at 707.693 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.032 kb on - strand, within SMc03009 at 708.099 kb on - strand at 708.222 kb on + strand at 708.223 kb on - strand at 708.397 kb on - strand, within SMc03010 at 708.471 kb on + strand, within SMc03010 at 708.808 kb on + strand, within SMc03010 at 708.846 kb on + strand, within SMc03010 at 709.087 kb on + strand at 709.087 kb on + strand at 709.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 706,596 - -0.2 706,596 - +0.4 706,618 + +0.2 706,618 + -2.3 706,618 + -1.7 706,618 + -0.4 706,618 + -0.6 706,619 - +0.2 706,619 - +0.1 706,689 - +0.0 707,161 + SMc03008 0.85 +0.2 707,185 + -1.0 707,336 + SMc03009 0.12 +0.4 707,336 + SMc03009 0.12 -0.7 707,336 + SMc03009 0.12 -0.5 707,355 - SMc03009 0.14 -0.5 707,355 - SMc03009 0.14 -0.7 707,385 - SMc03009 0.17 -0.5 707,575 + SMc03009 0.38 -0.5 707,693 + SMc03009 0.51 -0.6 708,029 + SMc03009 0.88 -1.3 708,029 + SMc03009 0.88 +0.1 708,029 + SMc03009 0.88 -1.8 708,032 - SMc03009 0.88 +0.2 708,099 - +0.4 708,222 + +0.6 708,223 - +0.2 708,397 - SMc03010 0.25 -0.6 708,471 + SMc03010 0.32 +0.1 708,808 + SMc03010 0.64 -0.4 708,846 + SMc03010 0.68 -1.5 709,087 + -0.3 709,087 + +0.0 709,088 - -0.8
Or see this region's nucleotide sequence