Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02487 and SMc02486 are separated by 36 nucleotides SMc02486 and SMc02485 overlap by 4 nucleotides SMc02485 and SMc02484 overlap by 1 nucleotides
SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520
SMc02487
SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309
SMc02486
SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806
SMc02485
SMc02484: SMc02484 - amino acid efflux transmembrane protein, at 3,310,806 to 3,311,450
SMc02484
Position (kb)
3309
3310
3311 Strain fitness (log2 ratio)
-2
-1
0
1 at 3309.598 kb on - strand at 3309.598 kb on - strand at 3309.622 kb on - strand at 3309.765 kb on - strand, within SMc02486 at 3309.765 kb on - strand, within SMc02486 at 3309.835 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.482 kb on - strand, within SMc02485 at 3310.695 kb on - strand, within SMc02485 at 3311.237 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 3,309,598 - -0.9 3,309,598 - +0.8 3,309,622 - -0.5 3,309,765 - SMc02486 0.28 -0.4 3,309,765 - SMc02486 0.28 -0.9 3,309,835 - SMc02486 0.37 +0.7 3,309,844 - SMc02486 0.38 -1.0 3,309,844 - SMc02486 0.38 -2.1 3,310,207 - SMc02486 0.86 -0.1 3,310,207 - SMc02486 0.86 -1.8 3,310,207 - SMc02486 0.86 -2.6 3,310,354 - -0.7 3,310,354 - -2.5 3,310,354 - -0.9 3,310,482 - SMc02485 0.35 -0.7 3,310,695 - SMc02485 0.78 -0.4 3,311,237 - SMc02484 0.67 -2.0 3,311,279 - SMc02484 0.73 -2.3 3,311,279 - SMc02484 0.73 -2.3 3,311,279 - SMc02484 0.73 +0.1 3,311,279 - SMc02484 0.73 -0.5
Or see this region's nucleotide sequence