Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02324 and SMc02325 are separated by 189 nucleotides SMc02325 and SMc03000 overlap by 4 nucleotides SMc03000 and SMc03001 overlap by 1 nucleotides
SMc02324: SMc02324 - periplasmic binding ABC transporter protein, at 695,084 to 696,073
SMc02324
SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774
SMc02325
SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751
SMc03000
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1
2 at 695.267 kb on + strand, within SMc02324 at 695.267 kb on + strand, within SMc02324 at 695.268 kb on - strand, within SMc02324 at 695.268 kb on - strand, within SMc02324 at 695.604 kb on - strand, within SMc02324 at 695.621 kb on + strand, within SMc02324 at 695.622 kb on - strand, within SMc02324 at 695.622 kb on - strand, within SMc02324 at 695.898 kb on - strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 696.033 kb on - strand at 696.033 kb on - strand at 696.033 kb on - strand at 696.141 kb on + strand at 696.142 kb on - strand at 696.142 kb on - strand at 696.291 kb on + strand at 696.292 kb on - strand at 696.345 kb on - strand at 696.408 kb on + strand at 696.409 kb on - strand at 696.409 kb on - strand at 696.422 kb on + strand, within SMc02325 at 696.422 kb on + strand, within SMc02325 at 696.423 kb on - strand, within SMc02325 at 696.804 kb on - strand, within SMc02325 at 696.804 kb on - strand, within SMc02325 at 696.894 kb on - strand, within SMc02325 at 696.896 kb on - strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.692 kb on - strand at 697.893 kb on + strand, within SMc03000 at 697.893 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.413 kb on + strand, within SMc03000 at 698.414 kb on - strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.632 kb on - strand, within SMc03000
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 695,267 + SMc02324 0.18 -0.3 695,267 + SMc02324 0.18 -0.3 695,268 - SMc02324 0.19 +0.5 695,268 - SMc02324 0.19 -2.2 695,604 - SMc02324 0.53 +0.2 695,621 + SMc02324 0.54 +0.3 695,622 - SMc02324 0.54 -0.5 695,622 - SMc02324 0.54 +0.1 695,898 - SMc02324 0.82 -0.4 695,918 + SMc02324 0.84 +0.2 695,918 + SMc02324 0.84 -1.4 695,918 + SMc02324 0.84 -0.1 696,033 - -0.4 696,033 - -0.2 696,033 - -0.2 696,141 + +2.0 696,142 - -0.4 696,142 - -1.8 696,291 + -0.8 696,292 - -0.4 696,345 - +0.4 696,408 + -1.5 696,409 - -2.4 696,409 - +0.2 696,422 + SMc02325 0.11 +2.6 696,422 + SMc02325 0.11 +0.0 696,423 - SMc02325 0.11 -0.3 696,804 - SMc02325 0.36 -0.8 696,804 - SMc02325 0.36 -0.2 696,894 - SMc02325 0.42 -1.2 696,896 - SMc02325 0.42 -1.8 697,115 + SMc02325 0.56 +0.6 697,115 + SMc02325 0.56 -1.8 697,116 - SMc02325 0.56 -0.7 697,116 - SMc02325 0.56 +0.3 697,256 + SMc02325 0.66 -1.9 697,256 + SMc02325 0.66 -1.3 697,256 + SMc02325 0.66 +0.2 697,257 - SMc02325 0.66 +0.3 697,257 - SMc02325 0.66 -0.8 697,257 - SMc02325 0.66 +0.4 697,257 - SMc02325 0.66 -0.6 697,692 - +0.9 697,893 + SMc03000 0.12 -0.6 697,893 + SMc03000 0.12 -0.2 698,118 + SMc03000 0.35 +0.3 698,118 + SMc03000 0.35 +0.0 698,118 + SMc03000 0.35 -1.4 698,158 + SMc03000 0.39 +1.8 698,158 + SMc03000 0.39 -0.6 698,158 + SMc03000 0.39 -0.2 698,413 + SMc03000 0.65 -1.8 698,414 - SMc03000 0.66 +0.5 698,449 + SMc03000 0.69 -0.7 698,449 + SMc03000 0.69 +0.5 698,631 + SMc03000 0.88 +0.3 698,631 + SMc03000 0.88 -0.6 698,632 - SMc03000 0.88 -0.4 698,632 - SMc03000 0.88 -0.8
Or see this region's nucleotide sequence