Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02237 and SMc02238 are separated by 107 nucleotides SMc02238 and SMc02239 are separated by 38 nucleotides SMc02239 and SMc02240 are separated by 29 nucleotides SMc02240 and SMc02241 are separated by 108 nucleotides
SMc02237: SMc02237 - DNA damage response helicase, ligase-associated <small>(from data)</small>, at 600,851 to 603,400
SMc02237
SMc02238: SMc02238 - hypothetical protein, at 603,508 to 604,014
SMc02238
SMc02239: SMc02239 - hypothetical protein, at 604,053 to 604,514
SMc02239
SMc02240: SMc02240 - hypothetical protein, at 604,544 to 605,179
SMc02240
SMc02241: SMc02241 - hypothetical protein, at 605,288 to 606,226
SMc02241
Position (kb) 604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 603.127 kb on - strand, within SMc02237 at 603.127 kb on - strand, within SMc02237 at 603.405 kb on - strand at 603.629 kb on - strand, within SMc02238 at 604.095 kb on + strand at 604.095 kb on + strand at 604.096 kb on - strand at 604.096 kb on - strand at 604.122 kb on + strand, within SMc02239 at 604.122 kb on + strand, within SMc02239 at 604.123 kb on - strand, within SMc02239 at 604.374 kb on + strand, within SMc02239 at 604.374 kb on + strand, within SMc02239 at 604.374 kb on + strand at 604.374 kb on + strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.512 kb on + strand at 604.545 kb on + strand at 604.558 kb on - strand at 604.725 kb on + strand, within SMc02240 at 604.725 kb on + strand, within SMc02240 at 604.725 kb on + strand, within SMc02240 at 604.726 kb on - strand, within SMc02240 at 604.770 kb on + strand, within SMc02240 at 604.788 kb on + strand, within SMc02240 at 604.944 kb on + strand, within SMc02240 at 604.945 kb on - strand at 604.945 kb on - strand, within SMc02240 at 605.001 kb on + strand, within SMc02240 at 605.002 kb on - strand, within SMc02240 at 605.143 kb on + strand at 605.261 kb on + strand at 605.407 kb on + strand, within SMc02241 at 605.408 kb on - strand, within SMc02241
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 603,127 - SMc02237 0.89 -0.3 603,127 - SMc02237 0.89 +0.9 603,405 - -1.7 603,629 - SMc02238 0.24 +1.2 604,095 + -0.2 604,095 + -1.2 604,096 - -0.1 604,096 - -0.5 604,122 + SMc02239 0.15 +0.9 604,122 + SMc02239 0.15 -0.5 604,123 - SMc02239 0.15 -0.6 604,374 + SMc02239 0.69 -1.5 604,374 + SMc02239 0.69 -2.1 604,374 + +1.1 604,374 + SMc02239 0.69 -2.8 604,375 - SMc02239 0.70 +0.4 604,375 - SMc02239 0.70 +1.1 604,375 - SMc02239 0.70 -0.7 604,512 + -1.1 604,545 + +0.1 604,558 - +0.3 604,725 + SMc02240 0.28 +0.1 604,725 + SMc02240 0.28 +0.0 604,725 + SMc02240 0.28 +0.1 604,726 - SMc02240 0.29 -1.4 604,770 + SMc02240 0.36 -0.3 604,788 + SMc02240 0.38 +0.3 604,944 + SMc02240 0.63 +0.3 604,945 - +2.7 604,945 - SMc02240 0.63 -1.4 605,001 + SMc02240 0.72 -0.5 605,002 - SMc02240 0.72 -0.7 605,143 + +0.3 605,261 + +0.6 605,407 + SMc02241 0.13 +0.0 605,408 - SMc02241 0.13 +0.8
Or see this region's nucleotide sequence