Strain Fitness in Sinorhizobium meliloti 1021 around SMc02152

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02153 and SMc02152 overlap by 4 nucleotidesSMc02152 and SMc02151 are separated by 47 nucleotides SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690 SMc02153 SMc02152: SMc02152 - helicase, at 556,687 to 560,199 SMc02152 SMc02151: SMc02151 - hypothetical protein, at 560,247 to 560,579 SMc02151 Position (kb) 556 557 558 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2 3at 555.724 kb on + strand, within SMc02153at 555.724 kb on + strand, within SMc02153at 555.725 kb on - strand, within SMc02153at 555.762 kb on - strand, within SMc02153at 555.801 kb on - strand, within SMc02153at 555.942 kb on - strand, within SMc02153at 555.942 kb on - strand, within SMc02153at 555.942 kb on - strand, within SMc02153at 556.046 kb on + strand, within SMc02153at 556.176 kb on + strand, within SMc02153at 556.221 kb on + strand, within SMc02153at 556.264 kb on - strand, within SMc02153at 556.266 kb on + strand, within SMc02153at 556.266 kb on + strand, within SMc02153at 556.267 kb on - strand, within SMc02153at 556.291 kb on + strand, within SMc02153at 556.291 kb on + strand, within SMc02153at 556.365 kb on + strand, within SMc02153at 556.366 kb on - strandat 556.366 kb on - strand, within SMc02153at 556.478 kb on + strand, within SMc02153at 556.479 kb on - strand, within SMc02153at 556.519 kb on - strand, within SMc02153at 556.649 kb on + strandat 556.664 kb on + strandat 556.665 kb on - strandat 556.781 kb on + strandat 556.782 kb on - strandat 556.782 kb on - strandat 556.839 kb on + strandat 556.859 kb on + strandat 556.965 kb on - strandat 557.386 kb on + strand, within SMc02152at 557.386 kb on + strand, within SMc02152at 557.387 kb on - strand, within SMc02152at 557.398 kb on + strand, within SMc02152at 557.398 kb on + strand, within SMc02152at 557.398 kb on + strand, within SMc02152at 557.398 kb on + strand, within SMc02152at 557.399 kb on - strand, within SMc02152at 557.399 kb on - strand, within SMc02152at 557.432 kb on + strand, within SMc02152at 557.432 kb on + strand, within SMc02152at 557.433 kb on - strand, within SMc02152at 557.668 kb on + strand, within SMc02152at 557.669 kb on - strand, within SMc02152at 557.772 kb on + strand, within SMc02152at 557.772 kb on + strandat 557.772 kb on + strand, within SMc02152at 557.772 kb on + strand, within SMc02152at 557.773 kb on - strand, within SMc02152at 557.873 kb on + strand, within SMc02152at 557.958 kb on + strand, within SMc02152at 557.959 kb on - strand, within SMc02152at 558.143 kb on - strand, within SMc02152at 558.411 kb on + strand, within SMc02152at 558.412 kb on - strand, within SMc02152at 558.468 kb on - strand, within SMc02152at 558.468 kb on - strand, within SMc02152at 558.530 kb on - strand, within SMc02152at 558.947 kb on + strand, within SMc02152at 559.202 kb on + strand, within SMc02152at 559.203 kb on - strand, within SMc02152at 559.212 kb on + strand, within SMc02152at 559.212 kb on + strand, within SMc02152at 559.212 kb on + strand, within SMc02152at 559.212 kb on + strand, within SMc02152at 559.212 kb on + strand, within SMc02152at 559.212 kb on + strand, within SMc02152at 559.213 kb on - strand, within SMc02152at 559.213 kb on - strand, within SMc02152at 559.213 kb on - strand, within SMc02152at 559.214 kb on + strand, within SMc02152at 559.214 kb on + strand, within SMc02152at 559.255 kb on - strand, within SMc02152at 559.271 kb on - strand, within SMc02152at 559.414 kb on + strand, within SMc02152at 559.436 kb on - strand, within SMc02152at 559.552 kb on - strand, within SMc02152at 559.552 kb on - strand, within SMc02152at 559.665 kb on - strand, within SMc02152at 559.690 kb on + strand, within SMc02152at 559.690 kb on + strand, within SMc02152at 559.778 kb on + strand, within SMc02152at 559.778 kb on + strand, within SMc02152at 559.791 kb on + strand, within SMc02152at 559.862 kb on + strandat 559.872 kb on + strandat 559.954 kb on - strandat 560.091 kb on + strandat 560.091 kb on + strandat 560.092 kb on - strandat 560.092 kb on - strandat 560.098 kb on + strandat 560.098 kb on + strandat 560.099 kb on - strandat 560.122 kb on + strandat 560.123 kb on - strandat 560.123 kb on - strandat 560.201 kb on + strandat 560.202 kb on - strandat 560.268 kb on + strandat 560.285 kb on - strand, within SMc02151at 560.483 kb on + strand, within SMc02151at 560.484 kb on - strand, within SMc02151at 560.554 kb on - strandat 560.557 kb on - strandat 560.655 kb on + strandat 560.673 kb on + strandat 560.750 kb on - strandat 560.768 kb on + strandat 560.770 kb on + strandat 560.771 kb on - strandat 560.783 kb on + strandat 560.799 kb on - strandat 560.886 kb on + strandat 560.887 kb on - strandat 560.887 kb on - strandat 560.899 kb on + strandat 560.900 kb on - strandat 561.004 kb on + strandat 561.004 kb on + strandat 561.005 kb on - strandat 561.079 kb on + strandat 561.079 kb on + strandat 561.079 kb on + strandat 561.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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555,724 + SMc02153 0.27 +0.5
555,724 + SMc02153 0.27 -0.5
555,725 - SMc02153 0.27 -0.4
555,762 - SMc02153 0.30 +0.2
555,801 - SMc02153 0.33 -0.2
555,942 - SMc02153 0.44 +2.5
555,942 - SMc02153 0.44 +1.2
555,942 - SMc02153 0.44 +0.6
556,046 + SMc02153 0.52 +0.6
556,176 + SMc02153 0.61 -2.6
556,221 + SMc02153 0.65 +0.1
556,264 - SMc02153 0.68 -0.3
556,266 + SMc02153 0.68 +1.1
556,266 + SMc02153 0.68 -0.5
556,267 - SMc02153 0.68 +0.9
556,291 + SMc02153 0.70 +0.1
556,291 + SMc02153 0.70 +0.6
556,365 + SMc02153 0.76 -0.7
556,366 - -0.5
556,366 - SMc02153 0.76 -1.5
556,478 + SMc02153 0.84 +0.1
556,479 - SMc02153 0.84 +0.9
556,519 - SMc02153 0.87 +0.3
556,649 + +1.8
556,664 + +0.4
556,665 - -0.7
556,781 + -0.2
556,782 - -1.2
556,782 - +1.4
556,839 + -0.5
556,859 + -0.4
556,965 - +0.4
557,386 + SMc02152 0.20 +1.7
557,386 + SMc02152 0.20 -1.4
557,387 - SMc02152 0.20 -0.9
557,398 + SMc02152 0.20 +0.5
557,398 + SMc02152 0.20 +0.6
557,398 + SMc02152 0.20 +0.3
557,398 + SMc02152 0.20 -0.3
557,399 - SMc02152 0.20 +0.5
557,399 - SMc02152 0.20 +0.0
557,432 + SMc02152 0.21 -0.1
557,432 + SMc02152 0.21 -0.2
557,433 - SMc02152 0.21 -1.2
557,668 + SMc02152 0.28 +0.2
557,669 - SMc02152 0.28 -1.9
557,772 + SMc02152 0.31 +0.1
557,772 + +3.1
557,772 + SMc02152 0.31 +0.2
557,772 + SMc02152 0.31 -0.5
557,773 - SMc02152 0.31 +1.0
557,873 + SMc02152 0.34 -2.0
557,958 + SMc02152 0.36 -0.8
557,959 - SMc02152 0.36 +0.5
558,143 - SMc02152 0.41 +1.0
558,411 + SMc02152 0.49 +1.2
558,412 - SMc02152 0.49 +0.1
558,468 - SMc02152 0.51 -1.7
558,468 - SMc02152 0.51 -1.7
558,530 - SMc02152 0.52 +1.3
558,947 + SMc02152 0.64 +1.7
559,202 + SMc02152 0.72 -0.7
559,203 - SMc02152 0.72 -1.6
559,212 + SMc02152 0.72 +0.4
559,212 + SMc02152 0.72 -1.8
559,212 + SMc02152 0.72 -0.7
559,212 + SMc02152 0.72 +0.7
559,212 + SMc02152 0.72 +2.1
559,212 + SMc02152 0.72 +0.5
559,213 - SMc02152 0.72 -1.3
559,213 - SMc02152 0.72 +0.1
559,213 - SMc02152 0.72 +0.4
559,214 + SMc02152 0.72 -0.4
559,214 + SMc02152 0.72 -0.3
559,255 - SMc02152 0.73 -0.0
559,271 - SMc02152 0.74 -1.4
559,414 + SMc02152 0.78 -0.0
559,436 - SMc02152 0.78 -0.2
559,552 - SMc02152 0.82 +1.3
559,552 - SMc02152 0.82 +1.3
559,665 - SMc02152 0.85 -0.5
559,690 + SMc02152 0.85 +0.9
559,690 + SMc02152 0.85 +2.5
559,778 + SMc02152 0.88 +0.2
559,778 + SMc02152 0.88 +2.1
559,791 + SMc02152 0.88 +0.2
559,862 + +0.5
559,872 + +0.2
559,954 - +0.8
560,091 + -0.3
560,091 + +0.4
560,092 - +0.5
560,092 - -0.7
560,098 + +0.6
560,098 + +0.2
560,099 - +0.0
560,122 + +0.5
560,123 - -0.2
560,123 - -0.5
560,201 + +0.3
560,202 - +0.1
560,268 + -0.5
560,285 - SMc02151 0.11 +0.2
560,483 + SMc02151 0.71 +0.4
560,484 - SMc02151 0.71 -0.4
560,554 - -1.1
560,557 - +0.3
560,655 + -1.4
560,673 + -0.1
560,750 - +0.4
560,768 + +1.1
560,770 + -0.3
560,771 - -0.9
560,783 + +1.1
560,799 - +0.7
560,886 + +0.8
560,887 - -0.1
560,887 - +0.2
560,899 + -0.4
560,900 - -0.5
561,004 + +0.5
561,004 + -0.2
561,005 - -0.1
561,079 + -0.4
561,079 + +0.4
561,079 + +1.3
561,080 - -2.1

Or see this region's nucleotide sequence