Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01957 and SMc01994 are separated by 564 nucleotides
SMc01957: SMc01957 - hypothetical protein, at 2,680,164 to 2,680,478
SMc01957
SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873
SMc01994
Position (kb)
2680
2681 Strain fitness (log2 ratio)
-2
-1
0
1 at 2679.252 kb on + strand at 2679.293 kb on + strand at 2679.314 kb on + strand at 2679.315 kb on - strand at 2679.369 kb on + strand at 2679.406 kb on + strand at 2679.407 kb on - strand at 2679.471 kb on + strand at 2679.484 kb on + strand at 2679.512 kb on + strand at 2679.512 kb on + strand at 2679.644 kb on + strand at 2679.664 kb on + strand at 2679.664 kb on + strand at 2679.788 kb on + strand at 2679.789 kb on - strand at 2679.795 kb on + strand at 2679.870 kb on - strand at 2679.960 kb on + strand at 2679.960 kb on + strand at 2679.961 kb on - strand at 2679.966 kb on - strand at 2680.000 kb on + strand at 2680.000 kb on + strand at 2680.000 kb on + strand at 2680.001 kb on - strand at 2680.001 kb on - strand at 2680.001 kb on - strand at 2680.147 kb on + strand at 2680.294 kb on + strand, within SMc01957 at 2680.295 kb on - strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.394 kb on + strand, within SMc01957 at 2680.438 kb on + strand, within SMc01957 at 2680.455 kb on + strand at 2680.491 kb on + strand at 2680.493 kb on + strand at 2680.494 kb on - strand at 2680.525 kb on + strand at 2680.540 kb on + strand at 2680.541 kb on - strand at 2680.541 kb on - strand at 2680.653 kb on + strand at 2680.654 kb on - strand at 2680.665 kb on + strand at 2680.666 kb on - strand at 2680.666 kb on - strand at 2680.709 kb on + strand at 2680.712 kb on + strand at 2680.790 kb on - strand at 2680.819 kb on + strand at 2680.834 kb on + strand at 2680.834 kb on + strand at 2680.834 kb on + strand at 2680.835 kb on - strand at 2680.835 kb on - strand at 2680.863 kb on + strand at 2680.864 kb on - strand at 2680.905 kb on + strand at 2680.929 kb on + strand at 2680.929 kb on + strand at 2680.929 kb on + strand at 2680.930 kb on - strand at 2680.930 kb on - strand at 2680.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 2,679,252 + -2.5 2,679,293 + +0.3 2,679,314 + +0.9 2,679,315 - +0.4 2,679,369 + -1.4 2,679,406 + -0.4 2,679,407 - -0.7 2,679,471 + +0.7 2,679,484 + +0.9 2,679,512 + +0.6 2,679,512 + -0.6 2,679,644 + -0.3 2,679,664 + -0.5 2,679,664 + +0.3 2,679,788 + -0.5 2,679,789 - +0.2 2,679,795 + +0.1 2,679,870 - +0.7 2,679,960 + -0.7 2,679,960 + -0.7 2,679,961 - +0.1 2,679,966 - -1.4 2,680,000 + +1.5 2,680,000 + +0.6 2,680,000 + -0.3 2,680,001 - +1.1 2,680,001 - -2.3 2,680,001 - -0.5 2,680,147 + +0.4 2,680,294 + SMc01957 0.41 +1.0 2,680,295 - SMc01957 0.42 -1.6 2,680,394 + SMc01957 0.73 -2.7 2,680,394 + SMc01957 0.73 -1.2 2,680,394 + SMc01957 0.73 -0.3 2,680,394 + SMc01957 0.73 +1.2 2,680,438 + SMc01957 0.87 +0.2 2,680,455 + -0.6 2,680,491 + -0.6 2,680,493 + +0.3 2,680,494 - -0.6 2,680,525 + -0.3 2,680,540 + +1.7 2,680,541 - -2.0 2,680,541 - -1.4 2,680,653 + +0.2 2,680,654 - -0.1 2,680,665 + -0.1 2,680,666 - +0.5 2,680,666 - -0.1 2,680,709 + -0.5 2,680,712 + +1.1 2,680,790 - +0.2 2,680,819 + +0.4 2,680,834 + -2.0 2,680,834 + -0.3 2,680,834 + -0.5 2,680,835 - -0.9 2,680,835 - +0.7 2,680,863 + +0.1 2,680,864 - +0.4 2,680,905 + -0.1 2,680,929 + +0.0 2,680,929 + -0.6 2,680,929 + +1.5 2,680,930 - -2.2 2,680,930 - -1.2 2,680,932 - -1.2
Or see this region's nucleotide sequence