Strain Fitness in Sinorhizobium meliloti 1021 around SMc01216
Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.2 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,707,454 | + | SMc01217 | 0.34 | -3.3 | |
1,707,507 | + | SMc01217 | 0.38 | -3.6 | |
1,707,507 | + | SMc01217 | 0.38 | -2.2 | |
1,707,507 | + | SMc01217 | 0.38 | -2.6 | |
1,707,508 | - | SMc01217 | 0.38 | -1.5 | |
1,707,542 | - | SMc01217 | 0.40 | -5.0 | |
1,707,658 | + | SMc01217 | 0.48 | -3.0 | |
1,707,658 | + | SMc01217 | 0.48 | -3.4 | |
1,707,659 | - | SMc01217 | 0.48 | -4.7 | |
1,707,659 | - | SMc01217 | 0.48 | -4.1 | |
1,707,681 | - | SMc01217 | 0.49 | -1.0 | |
1,707,873 | + | SMc01217 | 0.62 | -3.2 | |
1,707,873 | + | SMc01217 | 0.62 | -6.0 | |
1,707,874 | - | SMc01217 | 0.63 | -4.3 | |
1,707,874 | - | SMc01217 | 0.63 | +0.2 | |
1,707,874 | - | SMc01217 | 0.63 | -5.5 | |
1,707,882 | + | SMc01217 | 0.63 | -4.6 | |
1,707,950 | - | SMc01217 | 0.68 | -3.0 | |
1,708,084 | - | SMc01217 | 0.77 | -4.6 | |
1,708,230 | + | SMc01217 | 0.87 | -5.1 | |
1,708,637 | - | SMc01216 | 0.69 | -0.2 | |
1,708,639 | + | SMc01216 | 0.70 | +0.2 | |
1,708,640 | - | SMc01216 | 0.70 | +0.3 | |
1,708,721 | - | +0.9 | |||
1,708,723 | - | +0.1 | |||
1,709,368 | + | SMc01215 | 0.15 | -2.2 |
Or see this region's nucleotide sequence