Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00965 and SMc00964 are separated by 4 nucleotides SMc00964 and SMc00963 are separated by 31 nucleotides SMc00963 and SMc00962 overlap by 7 nucleotides SMc00962 and SMc00961 are separated by 133 nucleotides
SMc00965: SMc00965 - hypothetical protein, at 974,919 to 976,415
SMc00965
SMc00964: SMc00964 - hypothetical protein, at 976,420 to 976,983
SMc00964
SMc00963: SMc00963 - hypothetical protein, at 977,015 to 977,620
SMc00963
SMc00962: SMc00962 - ABC transporter ATP-binding protein, at 977,614 to 978,294
SMc00962
SMc00961: SMc00961 - hypothetical protein, at 978,428 to 979,627
SMc00961
Position (kb) 977
978 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 976.122 kb on + strand, within SMc00965 at 976.983 kb on + strand at 976.983 kb on + strand at 976.983 kb on + strand at 976.983 kb on + strand at 976.984 kb on - strand at 976.984 kb on - strand at 976.985 kb on + strand at 976.985 kb on + strand at 976.985 kb on + strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.992 kb on - strand at 976.992 kb on - strand at 976.992 kb on - strand at 977.001 kb on + strand at 977.002 kb on - strand at 977.017 kb on - strand at 977.158 kb on - strand, within SMc00963 at 977.265 kb on - strand, within SMc00963 at 977.402 kb on + strand, within SMc00963 at 977.403 kb on - strand, within SMc00963 at 977.466 kb on + strand, within SMc00963 at 977.604 kb on + strand at 977.605 kb on - strand at 977.605 kb on - strand at 977.605 kb on - strand at 978.330 kb on + strand at 978.331 kb on - strand at 978.333 kb on - strand at 978.333 kb on - strand at 978.348 kb on + strand at 978.349 kb on - strand at 978.360 kb on + strand at 978.361 kb on - strand at 978.372 kb on + strand at 978.372 kb on + strand at 978.372 kb on + strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.379 kb on - strand at 978.379 kb on - strand at 978.379 kb on - strand at 978.570 kb on + strand, within SMc00961 at 978.570 kb on + strand, within SMc00961 at 978.570 kb on + strand, within SMc00961 at 978.571 kb on - strand, within SMc00961
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 976,122 + SMc00965 0.80 +0.1 976,983 + -0.0 976,983 + -1.1 976,983 + -0.8 976,983 + -1.2 976,984 - -0.8 976,984 - -0.3 976,985 + -1.4 976,985 + -2.6 976,985 + -2.7 976,986 - -0.0 976,986 - -0.6 976,986 - +0.6 976,986 - +0.1 976,992 - +1.8 976,992 - -0.2 976,992 - +0.2 977,001 + -0.9 977,002 - -0.4 977,017 - -0.5 977,158 - SMc00963 0.24 -5.2 977,265 - SMc00963 0.41 -1.5 977,402 + SMc00963 0.64 -2.8 977,403 - SMc00963 0.64 -1.0 977,466 + SMc00963 0.74 -2.3 977,604 + -2.8 977,605 - -1.8 977,605 - +0.2 977,605 - -0.5 978,330 + -3.0 978,331 - -2.0 978,333 - -2.0 978,333 - -0.6 978,348 + -1.2 978,349 - -0.9 978,360 + +0.5 978,361 - +0.3 978,372 + -3.2 978,372 + -1.4 978,372 + -2.6 978,373 - -0.4 978,373 - +0.2 978,373 - +0.9 978,373 - -0.5 978,373 - +1.8 978,378 + +4.3 978,378 + -1.9 978,378 + +0.9 978,378 + -0.3 978,378 + -0.1 978,378 + +0.6 978,378 + +0.1 978,379 - -0.2 978,379 - +2.1 978,379 - +0.8 978,570 + SMc00961 0.12 +0.7 978,570 + SMc00961 0.12 +0.2 978,570 + SMc00961 0.12 -0.2 978,571 - SMc00961 0.12 +0.4
Or see this region's nucleotide sequence